miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 3' -57.7 NC_003521.1 + 241082 0.66 0.926604
Target:  5'- aUCCGCgcagcgagugUGGCGCGUGUuugCCGUgg-CCg -3'
miRNA:   3'- gGGGCG----------GCCGCGUACGa--GGCAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 240052 0.67 0.898654
Target:  5'- cCUCCGCCgauGGCGCcUGCUUgGcc-UCCg -3'
miRNA:   3'- -GGGGCGG---CCGCGuACGAGgCaauAGG- -5'
13940 3' -57.7 NC_003521.1 + 239513 0.66 0.940805
Target:  5'- aCCCGCCGuCGC-UGCUgacggCCGUgcagcgCCa -3'
miRNA:   3'- gGGGCGGCcGCGuACGA-----GGCAaua---GG- -5'
13940 3' -57.7 NC_003521.1 + 239382 0.67 0.892433
Target:  5'- gCCaCCGgCGGCGCA-GCUCgCGg---CCc -3'
miRNA:   3'- -GG-GGCgGCCGCGUaCGAG-GCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 238863 0.66 0.931552
Target:  5'- gCgCGCCGGCuGgGUGUcCCGcggGUCCg -3'
miRNA:   3'- gGgGCGGCCG-CgUACGaGGCaa-UAGG- -5'
13940 3' -57.7 NC_003521.1 + 235761 0.7 0.768254
Target:  5'- gCCCCGCCGGCcGCGa-CUCCGg----- -3'
miRNA:   3'- -GGGGCGGCCG-CGUacGAGGCaauagg -5'
13940 3' -57.7 NC_003521.1 + 234927 0.66 0.945112
Target:  5'- aUgCGCCGGCuCcgGCUCCuggcuGUUggGUCCg -3'
miRNA:   3'- gGgGCGGCCGcGuaCGAGG-----CAA--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 233867 0.67 0.904668
Target:  5'- aCCCCGCCGGagauCAUgGCgCCGUUcugaagCCg -3'
miRNA:   3'- -GGGGCGGCCgc--GUA-CGaGGCAAua----GG- -5'
13940 3' -57.7 NC_003521.1 + 233360 0.69 0.827705
Target:  5'- gCCUGCUGGaucCGCGgaUGCgucgCCGggAUCCg -3'
miRNA:   3'- gGGGCGGCC---GCGU--ACGa---GGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 231245 0.66 0.945112
Target:  5'- aCCCGCUGGCGuCAUGauagcaccCUUCGagcUCCc -3'
miRNA:   3'- gGGGCGGCCGC-GUAC--------GAGGCaauAGG- -5'
13940 3' -57.7 NC_003521.1 + 227377 0.67 0.898654
Target:  5'- -aCCGCCGcuGCGCuUGacgUCCGUcGUCCu -3'
miRNA:   3'- ggGGCGGC--CGCGuACg--AGGCAaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 225025 0.67 0.886005
Target:  5'- -gCCGCuCGGCGCA-GCagaUCaCGUcGUCCa -3'
miRNA:   3'- ggGGCG-GCCGCGUaCG---AG-GCAaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 224671 0.66 0.936286
Target:  5'- gCCUgGCCGGCGagGUGUaCCGgcuggCCg -3'
miRNA:   3'- -GGGgCGGCCGCg-UACGaGGCaaua-GG- -5'
13940 3' -57.7 NC_003521.1 + 224416 0.69 0.809751
Target:  5'- aCCUCGCCGGC-CAggcGCUgCGUggugggcgagcgGUCCa -3'
miRNA:   3'- -GGGGCGGCCGcGUa--CGAgGCAa-----------UAGG- -5'
13940 3' -57.7 NC_003521.1 + 224347 0.68 0.879377
Target:  5'- -aCCGCCGGCGCGcGCgcccgCCGg----- -3'
miRNA:   3'- ggGGCGGCCGCGUaCGa----GGCaauagg -5'
13940 3' -57.7 NC_003521.1 + 224082 0.66 0.945112
Target:  5'- cUCCgGCgGGCGCGcGCgCCGgcgGUCg -3'
miRNA:   3'- -GGGgCGgCCGCGUaCGaGGCaa-UAGg -5'
13940 3' -57.7 NC_003521.1 + 224080 0.7 0.759265
Target:  5'- gCCCGCgguggcggCGGCGCAgGC-CCGUcGUCUg -3'
miRNA:   3'- gGGGCG--------GCCGCGUaCGaGGCAaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 221203 0.66 0.926604
Target:  5'- gCCgCGUCGGCGCugauccUGCUgCUGU--UCCu -3'
miRNA:   3'- -GGgGCGGCCGCGu-----ACGA-GGCAauAGG- -5'
13940 3' -57.7 NC_003521.1 + 220792 0.66 0.931552
Target:  5'- aUCUCGCCGGCGCcAUGCagcaCCaGgaggCCa -3'
miRNA:   3'- -GGGGCGGCCGCG-UACGa---GG-CaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 218015 0.66 0.945112
Target:  5'- aCCCGCgucugUGGUGUcUGCgUCCGUgg-CCg -3'
miRNA:   3'- gGGGCG-----GCCGCGuACG-AGGCAauaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.