miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 3' -57.7 NC_003521.1 + 10748 1.12 0.00247
Target:  5'- uCCCCGCCGGCGCAUGCUCCGUUAUCCc -3'
miRNA:   3'- -GGGGCGGCCGCGUACGAGGCAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 27206 0.79 0.330737
Target:  5'- aCCCGCCgGGCGCGgaGCUCCGcUUGUgCa -3'
miRNA:   3'- gGGGCGG-CCGCGUa-CGAGGC-AAUAgG- -5'
13940 3' -57.7 NC_003521.1 + 91365 0.77 0.388594
Target:  5'- uCCCCGaCCGGCGCAggcGCagacgggccccuguUgCGUUGUCCg -3'
miRNA:   3'- -GGGGC-GGCCGCGUa--CG--------------AgGCAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 118531 0.77 0.415343
Target:  5'- aCCgCCGCUGGUGCcgGCUaCCGcgugAUCCa -3'
miRNA:   3'- -GG-GGCGGCCGCGuaCGA-GGCaa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 117408 0.75 0.511965
Target:  5'- cCCgCCGUCGGUGcCGUGC-CCGcgUAUCCu -3'
miRNA:   3'- -GG-GGCGGCCGC-GUACGaGGCa-AUAGG- -5'
13940 3' -57.7 NC_003521.1 + 71229 0.75 0.521232
Target:  5'- uCUCCGUCGGCGUG-GCUCCGUccggagCCg -3'
miRNA:   3'- -GGGGCGGCCGCGUaCGAGGCAaua---GG- -5'
13940 3' -57.7 NC_003521.1 + 186782 0.74 0.539955
Target:  5'- cCCCCGCUGGCGaCAccGC-CCGagAUCCc -3'
miRNA:   3'- -GGGGCGGCCGC-GUa-CGaGGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 17315 0.74 0.568442
Target:  5'- -aUCGUCGGCGCugcugGUGCUgCCGUUGUCg -3'
miRNA:   3'- ggGGCGGCCGCG-----UACGA-GGCAAUAGg -5'
13940 3' -57.7 NC_003521.1 + 67798 0.73 0.587644
Target:  5'- cCCaCCGgCGaGCGCGUGCUCCaaagcAUCCg -3'
miRNA:   3'- -GG-GGCgGC-CGCGUACGAGGcaa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 33243 0.73 0.597291
Target:  5'- aUCCGCCaGgGCuccuucugGUUCCGUUGUCCg -3'
miRNA:   3'- gGGGCGGcCgCGua------CGAGGCAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 73388 0.73 0.597291
Target:  5'- cCCCCGCCGuGCaGCAc-CUCCGUgg-CCa -3'
miRNA:   3'- -GGGGCGGC-CG-CGUacGAGGCAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 62025 0.73 0.606961
Target:  5'- gCCCGCCGG-GCAUGCcUCGcccGUCCc -3'
miRNA:   3'- gGGGCGGCCgCGUACGaGGCaa-UAGG- -5'
13940 3' -57.7 NC_003521.1 + 166533 0.73 0.616648
Target:  5'- gCCgCGCCGuGCGCGUGC-CCGUgagcacggCCc -3'
miRNA:   3'- -GGgGCGGC-CGCGUACGaGGCAaua-----GG- -5'
13940 3' -57.7 NC_003521.1 + 64761 0.73 0.616648
Target:  5'- gCCgGCCGGCGCG-GCaCCGggcgAUCCc -3'
miRNA:   3'- gGGgCGGCCGCGUaCGaGGCaa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 92458 0.72 0.636047
Target:  5'- aCCCCGCuCGGCuuGCccGCUCgGggGUCUc -3'
miRNA:   3'- -GGGGCG-GCCG--CGuaCGAGgCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 67821 0.72 0.654466
Target:  5'- gCCCGCCgccugacacaguuGGCGCAUGauCUCCGa-GUCCc -3'
miRNA:   3'- gGGGCGG-------------CCGCGUAC--GAGGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 153885 0.72 0.665107
Target:  5'- aCCCGCUGGCGCAggaGCUgCUGagcgCCa -3'
miRNA:   3'- gGGGCGGCCGCGUa--CGA-GGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 38318 0.72 0.665107
Target:  5'- cCCCUGUacaGGCGCGUaaaGCUaCCGUUA-CCg -3'
miRNA:   3'- -GGGGCGg--CCGCGUA---CGA-GGCAAUaGG- -5'
13940 3' -57.7 NC_003521.1 + 63087 0.72 0.674755
Target:  5'- gCUgCGCCGGCGCGcUGC-CCGcccUCCa -3'
miRNA:   3'- -GGgGCGGCCGCGU-ACGaGGCaauAGG- -5'
13940 3' -57.7 NC_003521.1 + 32888 0.72 0.674755
Target:  5'- gCgCCGCCGGUGC-UGCcgCCGUgcccgCCg -3'
miRNA:   3'- -GgGGCGGCCGCGuACGa-GGCAaua--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.