miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 3' -57.7 NC_003521.1 + 17137 0.7 0.794537
Target:  5'- aUCCUGCCGGCGC--GCUUCGc---CCg -3'
miRNA:   3'- -GGGGCGGCCGCGuaCGAGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 143462 0.7 0.759265
Target:  5'- -aCCGCCaGCGCGUGCUCaag-AUCg -3'
miRNA:   3'- ggGGCGGcCGCGUACGAGgcaaUAGg -5'
13940 3' -57.7 NC_003521.1 + 172320 0.7 0.759265
Target:  5'- aCgCCGCUGGCGCAgGCcUCGgccGUCCu -3'
miRNA:   3'- -GgGGCGGCCGCGUaCGaGGCaa-UAGG- -5'
13940 3' -57.7 NC_003521.1 + 16847 0.7 0.773596
Target:  5'- uCCUCGCCGGCGCAgGCggacgucuacgaCGUgcguUCCc -3'
miRNA:   3'- -GGGGCGGCCGCGUaCGag----------GCAau--AGG- -5'
13940 3' -57.7 NC_003521.1 + 116161 0.7 0.777134
Target:  5'- aCuuGCCGGUGCGcaccugcugcUGCUCCuGUgg-CCg -3'
miRNA:   3'- gGggCGGCCGCGU----------ACGAGG-CAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 165792 0.7 0.777134
Target:  5'- gCCCGCUGGCGC-UGCcgUCGcaguagggGUCCu -3'
miRNA:   3'- gGGGCGGCCGCGuACGa-GGCaa------UAGG- -5'
13940 3' -57.7 NC_003521.1 + 99017 0.7 0.785898
Target:  5'- gUCuuGUagacgaUGGCGCcgGCUCCGggccgGUCCg -3'
miRNA:   3'- -GGggCG------GCCGCGuaCGAGGCaa---UAGG- -5'
13940 3' -57.7 NC_003521.1 + 105594 0.7 0.785898
Target:  5'- gCCgCCGCCGGCGCAgccGCUCaGgcg-CUg -3'
miRNA:   3'- -GG-GGCGGCCGCGUa--CGAGgCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 114551 0.7 0.785898
Target:  5'- uUCCGCUGGCGCG-GUUgCGagAUCCc -3'
miRNA:   3'- gGGGCGGCCGCGUaCGAgGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 4674 0.7 0.750175
Target:  5'- gUCCCGCCGGCGaCGUcGCgcggucccccCCGUcccGUCCc -3'
miRNA:   3'- -GGGGCGGCCGC-GUA-CGa---------GGCAa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 197456 0.71 0.740991
Target:  5'- --gCGCCaGCGCAUGCUCUGgcggaUGUUCa -3'
miRNA:   3'- gggGCGGcCGCGUACGAGGCa----AUAGG- -5'
13940 3' -57.7 NC_003521.1 + 119477 0.71 0.731723
Target:  5'- -gCCGCgCGGgGCGUGCagggugaagCCGUUGUCg -3'
miRNA:   3'- ggGGCG-GCCgCGUACGa--------GGCAAUAGg -5'
13940 3' -57.7 NC_003521.1 + 67798 0.73 0.587644
Target:  5'- cCCaCCGgCGaGCGCGUGCUCCaaagcAUCCg -3'
miRNA:   3'- -GG-GGCgGC-CGCGUACGAGGcaa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 62025 0.73 0.606961
Target:  5'- gCCCGCCGG-GCAUGCcUCGcccGUCCc -3'
miRNA:   3'- gGGGCGGCCgCGUACGaGGCaa-UAGG- -5'
13940 3' -57.7 NC_003521.1 + 64761 0.73 0.616648
Target:  5'- gCCgGCCGGCGCG-GCaCCGggcgAUCCc -3'
miRNA:   3'- gGGgCGGCCGCGUaCGaGGCaa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 92458 0.72 0.636047
Target:  5'- aCCCCGCuCGGCuuGCccGCUCgGggGUCUc -3'
miRNA:   3'- -GGGGCG-GCCG--CGuaCGAGgCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 32888 0.72 0.674755
Target:  5'- gCgCCGCCGGUGC-UGCcgCCGUgcccgCCg -3'
miRNA:   3'- -GgGGCGGCCGCGuACGa-GGCAaua--GG- -5'
13940 3' -57.7 NC_003521.1 + 63087 0.72 0.674755
Target:  5'- gCUgCGCCGGCGCGcUGC-CCGcccUCCa -3'
miRNA:   3'- -GGgGCGGCCGCGU-ACGaGGCaauAGG- -5'
13940 3' -57.7 NC_003521.1 + 154484 0.71 0.693951
Target:  5'- -aCCGCCGGCGCcgGCaagaccUCCagcAUCCa -3'
miRNA:   3'- ggGGCGGCCGCGuaCG------AGGcaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 88733 0.71 0.722376
Target:  5'- uCCUCgcagaGCCGGCGCAcGUcgCCGUgGUCCu -3'
miRNA:   3'- -GGGG-----CGGCCGCGUaCGa-GGCAaUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.