miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 3' -57.7 NC_003521.1 + 117618 0.66 0.926604
Target:  5'- cCCCCGuccuacCCGGCGCcguAUGCggCCuacgGUCCc -3'
miRNA:   3'- -GGGGC------GGCCGCG---UACGa-GGcaa-UAGG- -5'
13940 3' -57.7 NC_003521.1 + 118914 0.66 0.940805
Target:  5'- cCCUCGUCGGCGCcgcggcguggGCggCGgcGUCCc -3'
miRNA:   3'- -GGGGCGGCCGCGua--------CGagGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 94034 0.66 0.940805
Target:  5'- gCUCGCCGGgGCccGC-CUucUGUCCa -3'
miRNA:   3'- gGGGCGGCCgCGuaCGaGGcaAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 79565 0.66 0.921441
Target:  5'- -gCCGCCGuCGC-UGCUCUG--AUCCu -3'
miRNA:   3'- ggGGCGGCcGCGuACGAGGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 163798 0.66 0.93058
Target:  5'- aCCaCCGCCGGCcucaaccGCAUGCUgCCccuggacggcggcGUcacGUCCg -3'
miRNA:   3'- -GG-GGCGGCCG-------CGUACGA-GG-------------CAa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 87932 0.66 0.931552
Target:  5'- gCCgCGCCGG-GCAUGCUCU----UCa -3'
miRNA:   3'- -GGgGCGGCCgCGUACGAGGcaauAGg -5'
13940 3' -57.7 NC_003521.1 + 83781 0.66 0.926097
Target:  5'- cCCCCGCCGcgcuccuccgaccGCGCccccgaaaccUGCUacucCCGUUGUgCCg -3'
miRNA:   3'- -GGGGCGGC-------------CGCGu---------ACGA----GGCAAUA-GG- -5'
13940 3' -57.7 NC_003521.1 + 77198 0.66 0.940805
Target:  5'- gCCCGCacgaagCGGUGgGUGaugCCGUUcUCCa -3'
miRNA:   3'- gGGGCG------GCCGCgUACga-GGCAAuAGG- -5'
13940 3' -57.7 NC_003521.1 + 91041 0.66 0.931552
Target:  5'- aCCgUGUCGGCGUgguuuaugggAUGgauCUCgGUUGUCCg -3'
miRNA:   3'- -GGgGCGGCCGCG----------UAC---GAGgCAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 43834 0.66 0.921441
Target:  5'- gCCgCCGCCGGcCGCggGC-CCGUc---- -3'
miRNA:   3'- -GG-GGCGGCC-GCGuaCGaGGCAauagg -5'
13940 3' -57.7 NC_003521.1 + 238863 0.66 0.931552
Target:  5'- gCgCGCCGGCuGgGUGUcCCGcggGUCCg -3'
miRNA:   3'- gGgGCGGCCG-CgUACGaGGCaa-UAGG- -5'
13940 3' -57.7 NC_003521.1 + 200234 0.66 0.926604
Target:  5'- aUCCGCgcagcgagugUGGCGCGUGUuugCCGUgg-CCg -3'
miRNA:   3'- gGGGCG----------GCCGCGUACGa--GGCAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 20707 0.66 0.931552
Target:  5'- gCCCGCCaaccuGGCGCGUGa--CGUgaugAUCg -3'
miRNA:   3'- gGGGCGG-----CCGCGUACgagGCAa---UAGg -5'
13940 3' -57.7 NC_003521.1 + 54148 0.66 0.926604
Target:  5'- -aCCGCCGGCGUuggagagGCcgCCGcc-UCCg -3'
miRNA:   3'- ggGGCGGCCGCGua-----CGa-GGCaauAGG- -5'
13940 3' -57.7 NC_003521.1 + 218015 0.66 0.945112
Target:  5'- aCCCGCgucugUGGUGUcUGCgUCCGUgg-CCg -3'
miRNA:   3'- gGGGCG-----GCCGCGuACG-AGGCAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 124133 0.66 0.921441
Target:  5'- uUCCCGCCcGCGCcgcUGCcUCCGccg-CCg -3'
miRNA:   3'- -GGGGCGGcCGCGu--ACG-AGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 30079 0.66 0.936286
Target:  5'- uCCCCGCCGGCc---GCUCaCGgUAgcagcgCCg -3'
miRNA:   3'- -GGGGCGGCCGcguaCGAG-GCaAUa-----GG- -5'
13940 3' -57.7 NC_003521.1 + 117149 0.66 0.926604
Target:  5'- gCCaCGCCGcagcGCGCcgGCUCCc---UCCa -3'
miRNA:   3'- gGG-GCGGC----CGCGuaCGAGGcaauAGG- -5'
13940 3' -57.7 NC_003521.1 + 68433 0.66 0.936286
Target:  5'- gCUCCGCCGGCGCcc-CUCaaccgCGUg--CCg -3'
miRNA:   3'- -GGGGCGGCCGCGuacGAG-----GCAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 117382 0.66 0.921441
Target:  5'- uCCCCGCuaCGGCGC---CUCCG---UCCu -3'
miRNA:   3'- -GGGGCG--GCCGCGuacGAGGCaauAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.