miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 3' -57.7 NC_003521.1 + 224671 0.66 0.936286
Target:  5'- gCCUgGCCGGCGagGUGUaCCGgcuggCCg -3'
miRNA:   3'- -GGGgCGGCCGCg-UACGaGGCaaua-GG- -5'
13940 3' -57.7 NC_003521.1 + 34978 0.66 0.945112
Target:  5'- -aUCGCgGGCGCAgaagGuCUCCGggG-CCa -3'
miRNA:   3'- ggGGCGgCCGCGUa---C-GAGGCaaUaGG- -5'
13940 3' -57.7 NC_003521.1 + 128710 0.66 0.926604
Target:  5'- aUCCGCCugGGCGagcGCUCgGUcAUCCu -3'
miRNA:   3'- gGGGCGG--CCGCguaCGAGgCAaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 533 0.66 0.926604
Target:  5'- aUCCGCgcagcgagugUGGCGCGUGUuugCCGUgg-CCg -3'
miRNA:   3'- gGGGCG----------GCCGCGUACGa--GGCAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 224082 0.66 0.945112
Target:  5'- cUCCgGCgGGCGCGcGCgCCGgcgGUCg -3'
miRNA:   3'- -GGGgCGgCCGCGUaCGaGGCaa-UAGg -5'
13940 3' -57.7 NC_003521.1 + 168776 0.66 0.936286
Target:  5'- gCCUGCUGGCGUcgccGUcCUCCGcc-UCCg -3'
miRNA:   3'- gGGGCGGCCGCG----UAcGAGGCaauAGG- -5'
13940 3' -57.7 NC_003521.1 + 76969 0.66 0.936286
Target:  5'- gCCgCCGCCGGUGCcaccGCUacacggacCCGUcGUCg -3'
miRNA:   3'- -GG-GGCGGCCGCGua--CGA--------GGCAaUAGg -5'
13940 3' -57.7 NC_003521.1 + 30355 0.66 0.931552
Target:  5'- gCCC-UCGGCGC-UGCUaCCGUgagcggCCg -3'
miRNA:   3'- gGGGcGGCCGCGuACGA-GGCAaua---GG- -5'
13940 3' -57.7 NC_003521.1 + 65010 0.66 0.921441
Target:  5'- gCCgGCCGGCGUcuugGC-CaCGgcGUCCa -3'
miRNA:   3'- gGGgCGGCCGCGua--CGaG-GCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 131024 0.66 0.926604
Target:  5'- cUCCC-CCGGCGCGgcGCUCgCGcccgCCg -3'
miRNA:   3'- -GGGGcGGCCGCGUa-CGAG-GCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 153074 0.66 0.945112
Target:  5'- uCCgCCGCCGGgGCccGggCCGggGcCCa -3'
miRNA:   3'- -GG-GGCGGCCgCGuaCgaGGCaaUaGG- -5'
13940 3' -57.7 NC_003521.1 + 210299 0.66 0.926604
Target:  5'- gUCUCGuuaCCGuGUGCAgaGCUCCGU-GUCCg -3'
miRNA:   3'- -GGGGC---GGC-CGCGUa-CGAGGCAaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 220792 0.66 0.931552
Target:  5'- aUCUCGCCGGCGCcAUGCagcaCCaGgaggCCa -3'
miRNA:   3'- -GGGGCGGCCGCG-UACGa---GG-CaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 4395 0.66 0.926604
Target:  5'- -gCCGCCGGCcc--GCUCCcgUAUCCc -3'
miRNA:   3'- ggGGCGGCCGcguaCGAGGcaAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 201802 0.66 0.940805
Target:  5'- aCCCGCCGuCGC-UGCUgacggCCGUgcagcgCCa -3'
miRNA:   3'- gGGGCGGCcGCGuACGA-----GGCAaua---GG- -5'
13940 3' -57.7 NC_003521.1 + 216692 0.66 0.921441
Target:  5'- uCCCCGCgaaGGUGC-UGCgagCGU-AUCCg -3'
miRNA:   3'- -GGGGCGg--CCGCGuACGag-GCAaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 43834 0.66 0.921441
Target:  5'- gCCgCCGCCGGcCGCggGC-CCGUc---- -3'
miRNA:   3'- -GG-GGCGGCC-GCGuaCGaGGCAauagg -5'
13940 3' -57.7 NC_003521.1 + 202452 0.66 0.931552
Target:  5'- gCgCGCCGGCuGgGUGUcCCGcggGUCCg -3'
miRNA:   3'- gGgGCGGCCG-CgUACGaGGCaa-UAGG- -5'
13940 3' -57.7 NC_003521.1 + 193537 0.66 0.940805
Target:  5'- gCCCGucCCGGCaCccGCUCCGcagccgaccgUAUCCg -3'
miRNA:   3'- gGGGC--GGCCGcGuaCGAGGCa---------AUAGG- -5'
13940 3' -57.7 NC_003521.1 + 218015 0.66 0.945112
Target:  5'- aCCCGCgucugUGGUGUcUGCgUCCGUgg-CCg -3'
miRNA:   3'- gGGGCG-----GCCGCGuACG-AGGCAauaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.