miRNA display CGI


Results 1 - 20 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 3' -57.7 NC_003521.1 + 10748 1.12 0.00247
Target:  5'- uCCCCGCCGGCGCAUGCUCCGUUAUCCc -3'
miRNA:   3'- -GGGGCGGCCGCGUACGAGGCAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 55180 0.71 0.700628
Target:  5'- gCCCaCGCCGGCGCugauccugcaaacgGUGCgcagCCacugcgUGUCCa -3'
miRNA:   3'- -GGG-GCGGCCGCG--------------UACGa---GGca----AUAGG- -5'
13940 3' -57.7 NC_003521.1 + 39278 0.71 0.740991
Target:  5'- cCUUCGgCGGCGCccGCUCCGg---CCu -3'
miRNA:   3'- -GGGGCgGCCGCGuaCGAGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 218015 0.66 0.945112
Target:  5'- aCCCGCgucugUGGUGUcUGCgUCCGUgg-CCg -3'
miRNA:   3'- gGGGCG-----GCCGCGuACG-AGGCAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 71229 0.75 0.521232
Target:  5'- uCUCCGUCGGCGUG-GCUCCGUccggagCCg -3'
miRNA:   3'- -GGGGCGGCCGCGUaCGAGGCAaua---GG- -5'
13940 3' -57.7 NC_003521.1 + 186782 0.74 0.539955
Target:  5'- cCCCCGCUGGCGaCAccGC-CCGagAUCCc -3'
miRNA:   3'- -GGGGCGGCCGC-GUa-CGaGGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 33243 0.73 0.597291
Target:  5'- aUCCGCCaGgGCuccuucugGUUCCGUUGUCCg -3'
miRNA:   3'- gGGGCGGcCgCGua------CGAGGCAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 73388 0.73 0.597291
Target:  5'- cCCCCGCCGuGCaGCAc-CUCCGUgg-CCa -3'
miRNA:   3'- -GGGGCGGC-CG-CGUacGAGGCAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 153885 0.72 0.665107
Target:  5'- aCCCGCUGGCGCAggaGCUgCUGagcgCCa -3'
miRNA:   3'- gGGGCGGCCGCGUa--CGA-GGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 120056 0.71 0.693951
Target:  5'- gCCCCGCUGGCGCcggaagGUGgaCCGcag-CCu -3'
miRNA:   3'- -GGGGCGGCCGCG------UACgaGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 154743 0.72 0.674755
Target:  5'- gUCuuGCCGGCGCcgGCggugCCGgugaCCa -3'
miRNA:   3'- -GGggCGGCCGCGuaCGa---GGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 67821 0.72 0.654466
Target:  5'- gCCCGCCgccugacacaguuGGCGCAUGauCUCCGa-GUCCc -3'
miRNA:   3'- gGGGCGG-------------CCGCGUAC--GAGGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 27206 0.79 0.330737
Target:  5'- aCCCGCCgGGCGCGgaGCUCCGcUUGUgCa -3'
miRNA:   3'- gGGGCGG-CCGCGUa-CGAGGC-AAUAgG- -5'
13940 3' -57.7 NC_003521.1 + 71181 0.72 0.674755
Target:  5'- aCCCUGCUGGCGCugacgGCUCUGa----- -3'
miRNA:   3'- -GGGGCGGCCGCGua---CGAGGCaauagg -5'
13940 3' -57.7 NC_003521.1 + 91365 0.77 0.388594
Target:  5'- uCCCCGaCCGGCGCAggcGCagacgggccccuguUgCGUUGUCCg -3'
miRNA:   3'- -GGGGC-GGCCGCGUa--CG--------------AgGCAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 166533 0.73 0.616648
Target:  5'- gCCgCGCCGuGCGCGUGC-CCGUgagcacggCCc -3'
miRNA:   3'- -GGgGCGGC-CGCGUACGaGGCAaua-----GG- -5'
13940 3' -57.7 NC_003521.1 + 117154 0.72 0.684372
Target:  5'- cUCCCGCCGGCGCGccGCcgcagCCGcg--CCa -3'
miRNA:   3'- -GGGGCGGCCGCGUa-CGa----GGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 204558 0.71 0.71296
Target:  5'- aCCCGCCGGuCGUcgGCaugCCGgucaUGUCg -3'
miRNA:   3'- gGGGCGGCC-GCGuaCGa--GGCa---AUAGg -5'
13940 3' -57.7 NC_003521.1 + 118531 0.77 0.415343
Target:  5'- aCCgCCGCUGGUGCcgGCUaCCGcgugAUCCa -3'
miRNA:   3'- -GG-GGCGGCCGCGuaCGA-GGCaa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 17315 0.74 0.568442
Target:  5'- -aUCGUCGGCGCugcugGUGCUgCCGUUGUCg -3'
miRNA:   3'- ggGGCGGCCGCG-----UACGA-GGCAAUAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.