miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 5' -52.8 NC_003521.1 + 123984 0.66 0.991965
Target:  5'- cGGGUcgcaggUCGAugugcagcuggaucaGGugGUAgGUGCCGCGGu -3'
miRNA:   3'- -CUCA------AGCU---------------UUugCGUgCACGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 127081 0.68 0.975876
Target:  5'- cGAGcacgCGAAggUGCugGaggUGCgCGCGGAg -3'
miRNA:   3'- -CUCaa--GCUUuuGCGugC---ACG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 129698 0.66 0.992585
Target:  5'- -cGggCGAGGACGCcCGcuucugccgGCCGCGGc -3'
miRNA:   3'- cuCaaGCUUUUGCGuGCa--------CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 130044 0.68 0.975876
Target:  5'- ---cUCGGc-GCGCACGUGC-GCGGGa -3'
miRNA:   3'- cucaAGCUuuUGCGUGCACGgCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 131349 0.67 0.987638
Target:  5'- -cGUcCGGAGccCGCGCGaGCCGCGGu -3'
miRNA:   3'- cuCAaGCUUUu-GCGUGCaCGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 133022 0.68 0.973043
Target:  5'- cAGcUCGGAuAACGCuacguuuuugaauGCGUGCuCGCGGAc -3'
miRNA:   3'- cUCaAGCUU-UUGCG-------------UGCACG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 133480 0.68 0.97331
Target:  5'- cGAGgUCGAGgaucaccuGGCGC-CGcUGCUGCGGGg -3'
miRNA:   3'- -CUCaAGCUU--------UUGCGuGC-ACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 133659 0.7 0.940906
Target:  5'- aGAGccgacgCGAAAGCGCGgaccgccgcgcUGUGCCgGCGGAc -3'
miRNA:   3'- -CUCaa----GCUUUUGCGU-----------GCACGG-CGCCU- -5'
13940 5' -52.8 NC_003521.1 + 134198 0.75 0.758714
Target:  5'- uGAGgucgUCGGAgaAGCGCugGUGCCGCu-- -3'
miRNA:   3'- -CUCa---AGCUU--UUGCGugCACGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 137473 0.7 0.949645
Target:  5'- cGAGUggaAGGGCGCcgGCGUGUCGCGGc -3'
miRNA:   3'- -CUCAagcUUUUGCG--UGCACGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 137666 0.66 0.991191
Target:  5'- uGAGgUCGGGguugaugucGACGCGCGUcugcaccaguucgcGuCCGCGGAu -3'
miRNA:   3'- -CUCaAGCUU---------UUGCGUGCA--------------C-GGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 140715 0.73 0.821607
Target:  5'- cGGGUgaCGggGACgGCACGgagGCCGgGGAg -3'
miRNA:   3'- -CUCAa-GCuuUUG-CGUGCa--CGGCgCCU- -5'
13940 5' -52.8 NC_003521.1 + 142463 0.66 0.991529
Target:  5'- gGAGggCGAGAGCG-GCG-GCgGCGGu -3'
miRNA:   3'- -CUCaaGCUUUUGCgUGCaCGgCGCCu -5'
13940 5' -52.8 NC_003521.1 + 142628 0.67 0.982491
Target:  5'- -cGUUgGAGGAgGCgGCGgcgGCCGCGGc -3'
miRNA:   3'- cuCAAgCUUUUgCG-UGCa--CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 142703 0.68 0.975876
Target:  5'- -cGUgccUGAAGACGCugGUGCCGaCGc- -3'
miRNA:   3'- cuCAa--GCUUUUGCGugCACGGC-GCcu -5'
13940 5' -52.8 NC_003521.1 + 143548 0.73 0.826654
Target:  5'- cGAGgcgcUCGAAcAUGCGCGggucgcaggucagGCCGCGGAu -3'
miRNA:   3'- -CUCa---AGCUUuUGCGUGCa------------CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 144929 0.68 0.975876
Target:  5'- gGAGUUCaugu-CGCGCGUcGCCGCGc- -3'
miRNA:   3'- -CUCAAGcuuuuGCGUGCA-CGGCGCcu -5'
13940 5' -52.8 NC_003521.1 + 147591 0.68 0.978257
Target:  5'- aGAGUcCGAGGGCGCcuaGCGcGUCGUGGu -3'
miRNA:   3'- -CUCAaGCUUUUGCG---UGCaCGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 149250 0.67 0.989064
Target:  5'- cGGGcgUGAAggUGCGCGccaGCaCGCGGAu -3'
miRNA:   3'- -CUCaaGCUUuuGCGUGCa--CG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 153925 0.69 0.964435
Target:  5'- cAGUUCGu--GCGCGCG-GCCGUGc- -3'
miRNA:   3'- cUCAAGCuuuUGCGUGCaCGGCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.