miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 5' -52.8 NC_003521.1 + 85615 0.67 0.990358
Target:  5'- aGGGggUGAgagAGACGCcggccuGCGgcggGCCGCGGGc -3'
miRNA:   3'- -CUCaaGCU---UUUGCG------UGCa---CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 88041 0.7 0.931243
Target:  5'- uGAGcUCGuuGAGCGCGCGgaugagGUCGCGGu -3'
miRNA:   3'- -CUCaAGCu-UUUGCGUGCa-----CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 88727 0.69 0.961064
Target:  5'- cGGGUcuccUCGcAGAgccgGCGCACGUcGCCGUGGu -3'
miRNA:   3'- -CUCA----AGC-UUU----UGCGUGCA-CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 88873 0.67 0.990358
Target:  5'- cGAGgUCac-GGCGCACGUgGCUGUGGGc -3'
miRNA:   3'- -CUCaAGcuuUUGCGUGCA-CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 100948 0.69 0.967595
Target:  5'- cGGGUUCGuaguccagacaGAAGCGC-CGUGCC-CGGc -3'
miRNA:   3'- -CUCAAGC-----------UUUUGCGuGCACGGcGCCu -5'
13940 5' -52.8 NC_003521.1 + 101244 0.68 0.970552
Target:  5'- cGAG--CGAGAACGC-CGUGCgCGcCGGGc -3'
miRNA:   3'- -CUCaaGCUUUUGCGuGCACG-GC-GCCU- -5'
13940 5' -52.8 NC_003521.1 + 101731 0.67 0.990234
Target:  5'- cGGGggCGAGAugGgGaaggccggcagguCGUGCgGCGGAu -3'
miRNA:   3'- -CUCaaGCUUUugCgU-------------GCACGgCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 102594 0.67 0.985908
Target:  5'- cGGcgUCGGcgcccacGCGCACGacgacgaUGCCGCGGAc -3'
miRNA:   3'- cUCa-AGCUuu-----UGCGUGC-------ACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 103385 0.73 0.854025
Target:  5'- ---gUCGGGcAGcCGCGCGUGCuCGCGGAa -3'
miRNA:   3'- cucaAGCUU-UU-GCGUGCACG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 103881 0.66 0.993443
Target:  5'- -uGUUCGAGGGCcaguacaGCAcCGUGCCcaccGUGGAg -3'
miRNA:   3'- cuCAAGCUUUUG-------CGU-GCACGG----CGCCU- -5'
13940 5' -52.8 NC_003521.1 + 104951 0.68 0.98046
Target:  5'- cGGUuacUCGAa---GguCGUGCCGCGGGg -3'
miRNA:   3'- cUCA---AGCUuuugCguGCACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 112187 0.67 0.987638
Target:  5'- cGAGgaucUGGAGGgGCGCGUGUCcgaaGCGGAg -3'
miRNA:   3'- -CUCaa--GCUUUUgCGUGCACGG----CGCCU- -5'
13940 5' -52.8 NC_003521.1 + 114035 0.78 0.579549
Target:  5'- cGAGgaUGGAGACGCG-GUGCCGCGGc -3'
miRNA:   3'- -CUCaaGCUUUUGCGUgCACGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 117060 0.69 0.957478
Target:  5'- gGGGUcgCGGccguAGACGgccaGCGUGCCGCGGc -3'
miRNA:   3'- -CUCAa-GCU----UUUGCg---UGCACGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 118376 0.66 0.995138
Target:  5'- cGGGgcUGGAGGCGguCGUGgUCGUGGGc -3'
miRNA:   3'- -CUCaaGCUUUUGCguGCAC-GGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 118760 0.69 0.964107
Target:  5'- uGAGUcggCGGccguGCGCACGUcgcccugcaucucGCUGCGGAg -3'
miRNA:   3'- -CUCAa--GCUuu--UGCGUGCA-------------CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 119030 0.67 0.989064
Target:  5'- cAGggCGAcguGCGCACG-GCCGCcGAc -3'
miRNA:   3'- cUCaaGCUuu-UGCGUGCaCGGCGcCU- -5'
13940 5' -52.8 NC_003521.1 + 120570 0.68 0.98046
Target:  5'- uGGGUgUCGAGgcGAUGCACGgcgcgGCCGcCGGc -3'
miRNA:   3'- -CUCA-AGCUU--UUGCGUGCa----CGGC-GCCu -5'
13940 5' -52.8 NC_003521.1 + 123081 0.66 0.994382
Target:  5'- cGGUagCGGcgGCGUGuCGcUGCCGCGGGa -3'
miRNA:   3'- cUCAa-GCUuuUGCGU-GC-ACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 123614 0.69 0.964435
Target:  5'- ---gUCGGAGGC-CACG-GCCGCGGc -3'
miRNA:   3'- cucaAGCUUUUGcGUGCaCGGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.