Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13940 | 5' | -52.8 | NC_003521.1 | + | 154083 | 0.66 | 0.995138 |
Target: 5'- aGAGcgUGGAAACGgGCGUGCUG-GGc -3' miRNA: 3'- -CUCaaGCUUUUGCgUGCACGGCgCCu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 153925 | 0.69 | 0.964435 |
Target: 5'- cAGUUCGu--GCGCGCG-GCCGUGc- -3' miRNA: 3'- cUCAAGCuuuUGCGUGCaCGGCGCcu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 149250 | 0.67 | 0.989064 |
Target: 5'- cGGGcgUGAAggUGCGCGccaGCaCGCGGAu -3' miRNA: 3'- -CUCaaGCUUuuGCGUGCa--CG-GCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 147591 | 0.68 | 0.978257 |
Target: 5'- aGAGUcCGAGGGCGCcuaGCGcGUCGUGGu -3' miRNA: 3'- -CUCAaGCUUUUGCG---UGCaCGGCGCCu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 144929 | 0.68 | 0.975876 |
Target: 5'- gGAGUUCaugu-CGCGCGUcGCCGCGc- -3' miRNA: 3'- -CUCAAGcuuuuGCGUGCA-CGGCGCcu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 143548 | 0.73 | 0.826654 |
Target: 5'- cGAGgcgcUCGAAcAUGCGCGggucgcaggucagGCCGCGGAu -3' miRNA: 3'- -CUCa---AGCUUuUGCGUGCa------------CGGCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 142703 | 0.68 | 0.975876 |
Target: 5'- -cGUgccUGAAGACGCugGUGCCGaCGc- -3' miRNA: 3'- cuCAa--GCUUUUGCGugCACGGC-GCcu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 142628 | 0.67 | 0.982491 |
Target: 5'- -cGUUgGAGGAgGCgGCGgcgGCCGCGGc -3' miRNA: 3'- cuCAAgCUUUUgCG-UGCa--CGGCGCCu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 142463 | 0.66 | 0.991529 |
Target: 5'- gGAGggCGAGAGCG-GCG-GCgGCGGu -3' miRNA: 3'- -CUCaaGCUUUUGCgUGCaCGgCGCCu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 140715 | 0.73 | 0.821607 |
Target: 5'- cGGGUgaCGggGACgGCACGgagGCCGgGGAg -3' miRNA: 3'- -CUCAa-GCuuUUG-CGUGCa--CGGCgCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 137666 | 0.66 | 0.991191 |
Target: 5'- uGAGgUCGGGguugaugucGACGCGCGUcugcaccaguucgcGuCCGCGGAu -3' miRNA: 3'- -CUCaAGCUU---------UUGCGUGCA--------------C-GGCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 137473 | 0.7 | 0.949645 |
Target: 5'- cGAGUggaAGGGCGCcgGCGUGUCGCGGc -3' miRNA: 3'- -CUCAagcUUUUGCG--UGCACGGCGCCu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 134198 | 0.75 | 0.758714 |
Target: 5'- uGAGgucgUCGGAgaAGCGCugGUGCCGCu-- -3' miRNA: 3'- -CUCa---AGCUU--UUGCGugCACGGCGccu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 133659 | 0.7 | 0.940906 |
Target: 5'- aGAGccgacgCGAAAGCGCGgaccgccgcgcUGUGCCgGCGGAc -3' miRNA: 3'- -CUCaa----GCUUUUGCGU-----------GCACGG-CGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 133480 | 0.68 | 0.97331 |
Target: 5'- cGAGgUCGAGgaucaccuGGCGC-CGcUGCUGCGGGg -3' miRNA: 3'- -CUCaAGCUU--------UUGCGuGC-ACGGCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 133022 | 0.68 | 0.973043 |
Target: 5'- cAGcUCGGAuAACGCuacguuuuugaauGCGUGCuCGCGGAc -3' miRNA: 3'- cUCaAGCUU-UUGCG-------------UGCACG-GCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 131349 | 0.67 | 0.987638 |
Target: 5'- -cGUcCGGAGccCGCGCGaGCCGCGGu -3' miRNA: 3'- cuCAaGCUUUu-GCGUGCaCGGCGCCu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 130044 | 0.68 | 0.975876 |
Target: 5'- ---cUCGGc-GCGCACGUGC-GCGGGa -3' miRNA: 3'- cucaAGCUuuUGCGUGCACGgCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 129698 | 0.66 | 0.992585 |
Target: 5'- -cGggCGAGGACGCcCGcuucugccgGCCGCGGc -3' miRNA: 3'- cuCaaGCUUUUGCGuGCa--------CGGCGCCu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 127081 | 0.68 | 0.975876 |
Target: 5'- cGAGcacgCGAAggUGCugGaggUGCgCGCGGAg -3' miRNA: 3'- -CUCaa--GCUUuuGCGugC---ACG-GCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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