miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 5' -52.8 NC_003521.1 + 222594 0.66 0.991529
Target:  5'- -cGgaUGAAAACGCGCa-GCuCGCGGAa -3'
miRNA:   3'- cuCaaGCUUUUGCGUGcaCG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 102594 0.67 0.985908
Target:  5'- cGGcgUCGGcgcccacGCGCACGacgacgaUGCCGCGGAc -3'
miRNA:   3'- cUCa-AGCUuu-----UGCGUGC-------ACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 149250 0.67 0.989064
Target:  5'- cGGGcgUGAAggUGCGCGccaGCaCGCGGAu -3'
miRNA:   3'- -CUCaaGCUUuuGCGUGCa--CG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 233361 0.67 0.989064
Target:  5'- uGGGUgggGAGGGCgGCGCGaGCgGCGGAg -3'
miRNA:   3'- -CUCAag-CUUUUG-CGUGCaCGgCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 154673 0.67 0.98418
Target:  5'- -----gGggGACGCGCGUGCCcgccuccugauugGCGGc -3'
miRNA:   3'- cucaagCuuUUGCGUGCACGG-------------CGCCu -5'
13940 5' -52.8 NC_003521.1 + 119030 0.67 0.989064
Target:  5'- cAGggCGAcguGCGCACG-GCCGCcGAc -3'
miRNA:   3'- cUCaaGCUuu-UGCGUGCaCGGCGcCU- -5'
13940 5' -52.8 NC_003521.1 + 131349 0.67 0.987638
Target:  5'- -cGUcCGGAGccCGCGCGaGCCGCGGu -3'
miRNA:   3'- cuCAaGCUUUu-GCGUGCaCGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 198540 0.67 0.990358
Target:  5'- ----cCGAuGACuGCugGUGCCGCuGGGa -3'
miRNA:   3'- cucaaGCUuUUG-CGugCACGGCG-CCU- -5'
13940 5' -52.8 NC_003521.1 + 85615 0.67 0.990358
Target:  5'- aGGGggUGAgagAGACGCcggccuGCGgcggGCCGCGGGc -3'
miRNA:   3'- -CUCaaGCU---UUUGCG------UGCa---CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 142628 0.67 0.982491
Target:  5'- -cGUUgGAGGAgGCgGCGgcgGCCGCGGc -3'
miRNA:   3'- cuCAAgCUUUUgCG-UGCa--CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 212714 0.67 0.989064
Target:  5'- uGGUUgaUGgcGugGCACGUGUCGCGa- -3'
miRNA:   3'- cUCAA--GCuuUugCGUGCACGGCGCcu -5'
13940 5' -52.8 NC_003521.1 + 154636 0.67 0.990358
Target:  5'- cGGcUUCGucAGCaaGCACGUGCCGCuGGc -3'
miRNA:   3'- cUC-AAGCuuUUG--CGUGCACGGCG-CCu -5'
13940 5' -52.8 NC_003521.1 + 34501 0.67 0.982491
Target:  5'- aGAGcagCGA--GCGCAgGUagcgGCCGCGGGc -3'
miRNA:   3'- -CUCaa-GCUuuUGCGUgCA----CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 112187 0.67 0.987638
Target:  5'- cGAGgaucUGGAGGgGCGCGUGUCcgaaGCGGAg -3'
miRNA:   3'- -CUCaa--GCUUUUgCGUGCACGG----CGCCU- -5'
13940 5' -52.8 NC_003521.1 + 25543 0.67 0.989064
Target:  5'- gGAGagCGAcggcGGACGCuguugugcagGCG-GCCGCGGGg -3'
miRNA:   3'- -CUCaaGCU----UUUGCG----------UGCaCGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 101731 0.67 0.990234
Target:  5'- cGGGggCGAGAugGgGaaggccggcagguCGUGCgGCGGAu -3'
miRNA:   3'- -CUCaaGCUUUugCgU-------------GCACGgCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 88873 0.67 0.990358
Target:  5'- cGAGgUCac-GGCGCACGUgGCUGUGGGc -3'
miRNA:   3'- -CUCaAGcuuUUGCGUGCA-CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 130044 0.68 0.975876
Target:  5'- ---cUCGGc-GCGCACGUGC-GCGGGa -3'
miRNA:   3'- cucaAGCUuuUGCGUGCACGgCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 133480 0.68 0.97331
Target:  5'- cGAGgUCGAGgaucaccuGGCGC-CGcUGCUGCGGGg -3'
miRNA:   3'- -CUCaAGCUU--------UUGCGuGC-ACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 76255 0.68 0.975876
Target:  5'- uGAGgcgCGAGAgGCGCACG-GCCGCc-- -3'
miRNA:   3'- -CUCaa-GCUUU-UGCGUGCaCGGCGccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.