miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 5' -52.8 NC_003521.1 + 224358 0.69 0.957478
Target:  5'- cGAGUUCGGcgaccgccGGCGCGCGcGCCcGcCGGAg -3'
miRNA:   3'- -CUCAAGCUu-------UUGCGUGCaCGG-C-GCCU- -5'
13940 5' -52.8 NC_003521.1 + 88727 0.69 0.961064
Target:  5'- cGGGUcuccUCGcAGAgccgGCGCACGUcGCCGUGGu -3'
miRNA:   3'- -CUCA----AGC-UUU----UGCGUGCA-CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 56353 0.69 0.961064
Target:  5'- --cUUCGAuc-UGCGCGUGCUGCGcGAg -3'
miRNA:   3'- cucAAGCUuuuGCGUGCACGGCGC-CU- -5'
13940 5' -52.8 NC_003521.1 + 79738 0.69 0.961064
Target:  5'- cAGUUC----AUGCAgauCGUGCCGCGGGg -3'
miRNA:   3'- cUCAAGcuuuUGCGU---GCACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 118760 0.69 0.964107
Target:  5'- uGAGUcggCGGccguGCGCACGUcgcccugcaucucGCUGCGGAg -3'
miRNA:   3'- -CUCAa--GCUuu--UGCGUGCA-------------CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 123614 0.69 0.964435
Target:  5'- ---gUCGGAGGC-CACG-GCCGCGGc -3'
miRNA:   3'- cucaAGCUUUUGcGUGCaCGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 153925 0.69 0.964435
Target:  5'- cAGUUCGu--GCGCGCG-GCCGUGc- -3'
miRNA:   3'- cUCAAGCuuuUGCGUGCaCGGCGCcu -5'
13940 5' -52.8 NC_003521.1 + 100948 0.69 0.967595
Target:  5'- cGGGUUCGuaguccagacaGAAGCGC-CGUGCC-CGGc -3'
miRNA:   3'- -CUCAAGC-----------UUUUGCGuGCACGGcGCCu -5'
13940 5' -52.8 NC_003521.1 + 101244 0.68 0.970552
Target:  5'- cGAG--CGAGAACGC-CGUGCgCGcCGGGc -3'
miRNA:   3'- -CUCaaGCUUUUGCGuGCACG-GC-GCCU- -5'
13940 5' -52.8 NC_003521.1 + 133022 0.68 0.973043
Target:  5'- cAGcUCGGAuAACGCuacguuuuugaauGCGUGCuCGCGGAc -3'
miRNA:   3'- cUCaAGCUU-UUGCG-------------UGCACG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 73218 0.68 0.97331
Target:  5'- ----aUGAGGAUGCGCGUGCCacaGGAg -3'
miRNA:   3'- cucaaGCUUUUGCGUGCACGGcg-CCU- -5'
13940 5' -52.8 NC_003521.1 + 133480 0.68 0.97331
Target:  5'- cGAGgUCGAGgaucaccuGGCGC-CGcUGCUGCGGGg -3'
miRNA:   3'- -CUCaAGCUU--------UUGCGuGC-ACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 76255 0.68 0.975876
Target:  5'- uGAGgcgCGAGAgGCGCACG-GCCGCc-- -3'
miRNA:   3'- -CUCaa-GCUUU-UGCGUGCaCGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 214186 0.68 0.975876
Target:  5'- cAGUUCG--GugGCaACGUGCCGCa-- -3'
miRNA:   3'- cUCAAGCuuUugCG-UGCACGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 144929 0.68 0.975876
Target:  5'- gGAGUUCaugu-CGCGCGUcGCCGCGc- -3'
miRNA:   3'- -CUCAAGcuuuuGCGUGCA-CGGCGCcu -5'
13940 5' -52.8 NC_003521.1 + 127081 0.68 0.975876
Target:  5'- cGAGcacgCGAAggUGCugGaggUGCgCGCGGAg -3'
miRNA:   3'- -CUCaa--GCUUuuGCGugC---ACG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 130044 0.68 0.975876
Target:  5'- ---cUCGGc-GCGCACGUGC-GCGGGa -3'
miRNA:   3'- cucaAGCUuuUGCGUGCACGgCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 142703 0.68 0.975876
Target:  5'- -cGUgccUGAAGACGCugGUGCCGaCGc- -3'
miRNA:   3'- cuCAa--GCUUUUGCGugCACGGC-GCcu -5'
13940 5' -52.8 NC_003521.1 + 5668 0.68 0.978257
Target:  5'- uGGGgggUCGAGAcacggGCGCcCGU-CCGCGGGg -3'
miRNA:   3'- -CUCa--AGCUUU-----UGCGuGCAcGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 225787 0.68 0.978257
Target:  5'- -cGUUCGucGACGCGCGacggcGCCgaGCGGGu -3'
miRNA:   3'- cuCAAGCuuUUGCGUGCa----CGG--CGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.