miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 5' -52.8 NC_003521.1 + 10714 1.09 0.00946
Target:  5'- cGAGUUCGAAAACGCACGUGCCGCGGAc -3'
miRNA:   3'- -CUCAAGCUUUUGCGUGCACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 40765 0.8 0.501045
Target:  5'- gGAGUUCGAGAuGCGCugcggcgccgugGCGcGCCGCGGAc -3'
miRNA:   3'- -CUCAAGCUUU-UGCG------------UGCaCGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 114035 0.78 0.579549
Target:  5'- cGAGgaUGGAGACGCG-GUGCCGCGGc -3'
miRNA:   3'- -CUCaaGCUUUUGCGUgCACGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 134198 0.75 0.758714
Target:  5'- uGAGgucgUCGGAgaAGCGCugGUGCCGCu-- -3'
miRNA:   3'- -CUCa---AGCUU--UUGCGugCACGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 140715 0.73 0.821607
Target:  5'- cGGGUgaCGggGACgGCACGgagGCCGgGGAg -3'
miRNA:   3'- -CUCAa-GCuuUUG-CGUGCa--CGGCgCCU- -5'
13940 5' -52.8 NC_003521.1 + 143548 0.73 0.826654
Target:  5'- cGAGgcgcUCGAAcAUGCGCGggucgcaggucagGCCGCGGAu -3'
miRNA:   3'- -CUCa---AGCUUuUGCGUGCa------------CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 103385 0.73 0.854025
Target:  5'- ---gUCGGGcAGcCGCGCGUGCuCGCGGAa -3'
miRNA:   3'- cucaAGCUU-UU-GCGUGCACG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 76706 0.73 0.854026
Target:  5'- cGAGUUCGAGAAgGUcuuCGUGUCGCuGAu -3'
miRNA:   3'- -CUCAAGCUUUUgCGu--GCACGGCGcCU- -5'
13940 5' -52.8 NC_003521.1 + 209580 0.72 0.876302
Target:  5'- gGGGUcCGggGGCGCACGUa--GCGGAg -3'
miRNA:   3'- -CUCAaGCuuUUGCGUGCAcggCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 76492 0.72 0.883308
Target:  5'- ---cUCGAGGACGUgcgcgcccaggGCGUGCCgGCGGGc -3'
miRNA:   3'- cucaAGCUUUUGCG-----------UGCACGG-CGCCU- -5'
13940 5' -52.8 NC_003521.1 + 209962 0.71 0.909114
Target:  5'- aGGGUUCGGAGAaGU---UGCCGCGGAc -3'
miRNA:   3'- -CUCAAGCUUUUgCGugcACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 226067 0.71 0.909114
Target:  5'- ----aCGAAGGCGCGCcccgGCCGCGGc -3'
miRNA:   3'- cucaaGCUUUUGCGUGca--CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 88041 0.7 0.931243
Target:  5'- uGAGcUCGuuGAGCGCGCGgaugagGUCGCGGu -3'
miRNA:   3'- -CUCaAGCu-UUUGCGUGCa-----CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 133659 0.7 0.940906
Target:  5'- aGAGccgacgCGAAAGCGCGgaccgccgcgcUGUGCCgGCGGAc -3'
miRNA:   3'- -CUCaa----GCUUUUGCGU-----------GCACGG-CGCCU- -5'
13940 5' -52.8 NC_003521.1 + 82752 0.7 0.94539
Target:  5'- cGGgaCGAGAucACGCGCGaccggcggGCCGUGGAg -3'
miRNA:   3'- cUCaaGCUUU--UGCGUGCa-------CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 62624 0.7 0.949645
Target:  5'- gGGGcgCGAGAGCGCGugcacCGUGCUGCcGAa -3'
miRNA:   3'- -CUCaaGCUUUUGCGU-----GCACGGCGcCU- -5'
13940 5' -52.8 NC_003521.1 + 168979 0.7 0.949645
Target:  5'- ---gUCGccGACGCGCGUcgGUCGCGGGa -3'
miRNA:   3'- cucaAGCuuUUGCGUGCA--CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 137473 0.7 0.949645
Target:  5'- cGAGUggaAGGGCGCcgGCGUGUCGCGGc -3'
miRNA:   3'- -CUCAagcUUUUGCG--UGCACGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 180818 0.69 0.952885
Target:  5'- -cGUUCGAaggccucuuugggAAACguguauuGCACGUaGCCGCGGGu -3'
miRNA:   3'- cuCAAGCU-------------UUUG-------CGUGCA-CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 117060 0.69 0.957478
Target:  5'- gGGGUcgCGGccguAGACGgccaGCGUGCCGCGGc -3'
miRNA:   3'- -CUCAa-GCU----UUUGCg---UGCACGGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.