miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 5' -52.8 NC_003521.1 + 120570 0.68 0.98046
Target:  5'- uGGGUgUCGAGgcGAUGCACGgcgcgGCCGcCGGc -3'
miRNA:   3'- -CUCA-AGCUU--UUGCGUGCa----CGGC-GCCu -5'
13940 5' -52.8 NC_003521.1 + 100948 0.69 0.967595
Target:  5'- cGGGUUCGuaguccagacaGAAGCGC-CGUGCC-CGGc -3'
miRNA:   3'- -CUCAAGC-----------UUUUGCGuGCACGGcGCCu -5'
13940 5' -52.8 NC_003521.1 + 133480 0.68 0.97331
Target:  5'- cGAGgUCGAGgaucaccuGGCGC-CGcUGCUGCGGGg -3'
miRNA:   3'- -CUCaAGCUU--------UUGCGuGC-ACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 76255 0.68 0.975876
Target:  5'- uGAGgcgCGAGAgGCGCACG-GCCGCc-- -3'
miRNA:   3'- -CUCaa-GCUUU-UGCGUGCaCGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 214186 0.68 0.975876
Target:  5'- cAGUUCG--GugGCaACGUGCCGCa-- -3'
miRNA:   3'- cUCAAGCuuUugCG-UGCACGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 144929 0.68 0.975876
Target:  5'- gGAGUUCaugu-CGCGCGUcGCCGCGc- -3'
miRNA:   3'- -CUCAAGcuuuuGCGUGCA-CGGCGCcu -5'
13940 5' -52.8 NC_003521.1 + 5668 0.68 0.978257
Target:  5'- uGGGgggUCGAGAcacggGCGCcCGU-CCGCGGGg -3'
miRNA:   3'- -CUCa--AGCUUU-----UGCGuGCAcGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 65151 0.68 0.98046
Target:  5'- ----gCGGAccuCGCACGgGCCGUGGAg -3'
miRNA:   3'- cucaaGCUUuu-GCGUGCaCGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 104951 0.68 0.98046
Target:  5'- cGGUuacUCGAa---GguCGUGCCGCGGGg -3'
miRNA:   3'- cUCA---AGCUuuugCguGCACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 118760 0.69 0.964107
Target:  5'- uGAGUcggCGGccguGCGCACGUcgcccugcaucucGCUGCGGAg -3'
miRNA:   3'- -CUCAa--GCUuu--UGCGUGCA-------------CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 88727 0.69 0.961064
Target:  5'- cGGGUcuccUCGcAGAgccgGCGCACGUcGCCGUGGu -3'
miRNA:   3'- -CUCA----AGC-UUU----UGCGUGCA-CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 180818 0.69 0.952885
Target:  5'- -cGUUCGAaggccucuuugggAAACguguauuGCACGUaGCCGCGGGu -3'
miRNA:   3'- cuCAAGCU-------------UUUG-------CGUGCA-CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 103385 0.73 0.854025
Target:  5'- ---gUCGGGcAGcCGCGCGUGCuCGCGGAa -3'
miRNA:   3'- cucaAGCUU-UU-GCGUGCACG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 209580 0.72 0.876302
Target:  5'- gGGGUcCGggGGCGCACGUa--GCGGAg -3'
miRNA:   3'- -CUCAaGCuuUUGCGUGCAcggCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 209962 0.71 0.909114
Target:  5'- aGGGUUCGGAGAaGU---UGCCGCGGAc -3'
miRNA:   3'- -CUCAAGCUUUUgCGugcACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 226067 0.71 0.909114
Target:  5'- ----aCGAAGGCGCGCcccgGCCGCGGc -3'
miRNA:   3'- cucaaGCUUUUGCGUGca--CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 88041 0.7 0.931243
Target:  5'- uGAGcUCGuuGAGCGCGCGgaugagGUCGCGGu -3'
miRNA:   3'- -CUCaAGCu-UUUGCGUGCa-----CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 82752 0.7 0.94539
Target:  5'- cGGgaCGAGAucACGCGCGaccggcggGCCGUGGAg -3'
miRNA:   3'- cUCaaGCUUU--UGCGUGCa-------CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 137473 0.7 0.949645
Target:  5'- cGAGUggaAGGGCGCcgGCGUGUCGCGGc -3'
miRNA:   3'- -CUCAagcUUUUGCG--UGCACGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 168979 0.7 0.949645
Target:  5'- ---gUCGccGACGCGCGUcgGUCGCGGGa -3'
miRNA:   3'- cucaAGCuuUUGCGUGCA--CGGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.