miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 5' -52.8 NC_003521.1 + 10714 1.09 0.00946
Target:  5'- cGAGUUCGAAAACGCACGUGCCGCGGAc -3'
miRNA:   3'- -CUCAAGCUUUUGCGUGCACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 73218 0.68 0.97331
Target:  5'- ----aUGAGGAUGCGCGUGCCacaGGAg -3'
miRNA:   3'- cucaaGCUUUUGCGUGCACGGcg-CCU- -5'
13940 5' -52.8 NC_003521.1 + 142703 0.68 0.975876
Target:  5'- -cGUgccUGAAGACGCugGUGCCGaCGc- -3'
miRNA:   3'- cuCAa--GCUUUUGCGugCACGGC-GCcu -5'
13940 5' -52.8 NC_003521.1 + 226028 0.66 0.995138
Target:  5'- cGAGcgCGA--GCgGCGCGUGCUGCa-- -3'
miRNA:   3'- -CUCaaGCUuuUG-CGUGCACGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 143548 0.73 0.826654
Target:  5'- cGAGgcgcUCGAAcAUGCGCGggucgcaggucagGCCGCGGAu -3'
miRNA:   3'- -CUCa---AGCUUuUGCGUGCa------------CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 76706 0.73 0.854026
Target:  5'- cGAGUUCGAGAAgGUcuuCGUGUCGCuGAu -3'
miRNA:   3'- -CUCAAGCUUUUgCGu--GCACGGCGcCU- -5'
13940 5' -52.8 NC_003521.1 + 133659 0.7 0.940906
Target:  5'- aGAGccgacgCGAAAGCGCGgaccgccgcgcUGUGCCgGCGGAc -3'
miRNA:   3'- -CUCaa----GCUUUUGCGU-----------GCACGG-CGCCU- -5'
13940 5' -52.8 NC_003521.1 + 62624 0.7 0.949645
Target:  5'- gGGGcgCGAGAGCGCGugcacCGUGCUGCcGAa -3'
miRNA:   3'- -CUCaaGCUUUUGCGU-----GCACGGCGcCU- -5'
13940 5' -52.8 NC_003521.1 + 79738 0.69 0.961064
Target:  5'- cAGUUC----AUGCAgauCGUGCCGCGGGg -3'
miRNA:   3'- cUCAAGcuuuUGCGU---GCACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 133022 0.68 0.973043
Target:  5'- cAGcUCGGAuAACGCuacguuuuugaauGCGUGCuCGCGGAc -3'
miRNA:   3'- cUCaAGCUU-UUGCG-------------UGCACG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 123614 0.69 0.964435
Target:  5'- ---gUCGGAGGC-CACG-GCCGCGGc -3'
miRNA:   3'- cucaAGCUUUUGcGUGCaCGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 224358 0.69 0.957478
Target:  5'- cGAGUUCGGcgaccgccGGCGCGCGcGCCcGcCGGAg -3'
miRNA:   3'- -CUCAAGCUu-------UUGCGUGCaCGG-C-GCCU- -5'
13940 5' -52.8 NC_003521.1 + 40765 0.8 0.501045
Target:  5'- gGAGUUCGAGAuGCGCugcggcgccgugGCGcGCCGCGGAc -3'
miRNA:   3'- -CUCAAGCUUU-UGCG------------UGCaCGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 153925 0.69 0.964435
Target:  5'- cAGUUCGu--GCGCGCG-GCCGUGc- -3'
miRNA:   3'- cUCAAGCuuuUGCGUGCaCGGCGCcu -5'
13940 5' -52.8 NC_003521.1 + 114035 0.78 0.579549
Target:  5'- cGAGgaUGGAGACGCG-GUGCCGCGGc -3'
miRNA:   3'- -CUCaaGCUUUUGCGUgCACGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 117060 0.69 0.957478
Target:  5'- gGGGUcgCGGccguAGACGgccaGCGUGCCGCGGc -3'
miRNA:   3'- -CUCAa-GCU----UUUGCg---UGCACGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 101244 0.68 0.970552
Target:  5'- cGAG--CGAGAACGC-CGUGCgCGcCGGGc -3'
miRNA:   3'- -CUCaaGCUUUUGCGuGCACG-GC-GCCU- -5'
13940 5' -52.8 NC_003521.1 + 130044 0.68 0.975876
Target:  5'- ---cUCGGc-GCGCACGUGC-GCGGGa -3'
miRNA:   3'- cucaAGCUuuUGCGUGCACGgCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 140715 0.73 0.821607
Target:  5'- cGGGUgaCGggGACgGCACGgagGCCGgGGAg -3'
miRNA:   3'- -CUCAa-GCuuUUG-CGUGCa--CGGCgCCU- -5'
13940 5' -52.8 NC_003521.1 + 76492 0.72 0.883308
Target:  5'- ---cUCGAGGACGUgcgcgcccaggGCGUGCCgGCGGGc -3'
miRNA:   3'- cucaAGCUUUUGCG-----------UGCACGG-CGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.