Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13940 | 5' | -52.8 | NC_003521.1 | + | 137666 | 0.66 | 0.991191 |
Target: 5'- uGAGgUCGGGguugaugucGACGCGCGUcugcaccaguucgcGuCCGCGGAu -3' miRNA: 3'- -CUCaAGCUU---------UUGCGUGCA--------------C-GGCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 198540 | 0.67 | 0.990358 |
Target: 5'- ----cCGAuGACuGCugGUGCCGCuGGGa -3' miRNA: 3'- cucaaGCUuUUG-CGugCACGGCG-CCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 154636 | 0.67 | 0.990358 |
Target: 5'- cGGcUUCGucAGCaaGCACGUGCCGCuGGc -3' miRNA: 3'- cUC-AAGCuuUUG--CGUGCACGGCG-CCu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 88873 | 0.67 | 0.990358 |
Target: 5'- cGAGgUCac-GGCGCACGUgGCUGUGGGc -3' miRNA: 3'- -CUCaAGcuuUUGCGUGCA-CGGCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 85615 | 0.67 | 0.990358 |
Target: 5'- aGGGggUGAgagAGACGCcggccuGCGgcggGCCGCGGGc -3' miRNA: 3'- -CUCaaGCU---UUUGCG------UGCa---CGGCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 101731 | 0.67 | 0.990234 |
Target: 5'- cGGGggCGAGAugGgGaaggccggcagguCGUGCgGCGGAu -3' miRNA: 3'- -CUCaaGCUUUugCgU-------------GCACGgCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 119030 | 0.67 | 0.989064 |
Target: 5'- cAGggCGAcguGCGCACG-GCCGCcGAc -3' miRNA: 3'- cUCaaGCUuu-UGCGUGCaCGGCGcCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 149250 | 0.67 | 0.989064 |
Target: 5'- cGGGcgUGAAggUGCGCGccaGCaCGCGGAu -3' miRNA: 3'- -CUCaaGCUUuuGCGUGCa--CG-GCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 25543 | 0.67 | 0.989064 |
Target: 5'- gGAGagCGAcggcGGACGCuguugugcagGCG-GCCGCGGGg -3' miRNA: 3'- -CUCaaGCU----UUUGCG----------UGCaCGGCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 212714 | 0.67 | 0.989064 |
Target: 5'- uGGUUgaUGgcGugGCACGUGUCGCGa- -3' miRNA: 3'- cUCAA--GCuuUugCGUGCACGGCGCcu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 233361 | 0.67 | 0.989064 |
Target: 5'- uGGGUgggGAGGGCgGCGCGaGCgGCGGAg -3' miRNA: 3'- -CUCAag-CUUUUG-CGUGCaCGgCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 131349 | 0.67 | 0.987638 |
Target: 5'- -cGUcCGGAGccCGCGCGaGCCGCGGu -3' miRNA: 3'- cuCAaGCUUUu-GCGUGCaCGGCGCCu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 112187 | 0.67 | 0.987638 |
Target: 5'- cGAGgaucUGGAGGgGCGCGUGUCcgaaGCGGAg -3' miRNA: 3'- -CUCaa--GCUUUUgCGUGCACGG----CGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 102594 | 0.67 | 0.985908 |
Target: 5'- cGGcgUCGGcgcccacGCGCACGacgacgaUGCCGCGGAc -3' miRNA: 3'- cUCa-AGCUuu-----UGCGUGC-------ACGGCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 154673 | 0.67 | 0.98418 |
Target: 5'- -----gGggGACGCGCGUGCCcgccuccugauugGCGGc -3' miRNA: 3'- cucaagCuuUUGCGUGCACGG-------------CGCCu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 142628 | 0.67 | 0.982491 |
Target: 5'- -cGUUgGAGGAgGCgGCGgcgGCCGCGGc -3' miRNA: 3'- cuCAAgCUUUUgCG-UGCa--CGGCGCCu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 34501 | 0.67 | 0.982491 |
Target: 5'- aGAGcagCGA--GCGCAgGUagcgGCCGCGGGc -3' miRNA: 3'- -CUCaa-GCUuuUGCGUgCA----CGGCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 120570 | 0.68 | 0.98046 |
Target: 5'- uGGGUgUCGAGgcGAUGCACGgcgcgGCCGcCGGc -3' miRNA: 3'- -CUCA-AGCUU--UUGCGUGCa----CGGC-GCCu -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 65151 | 0.68 | 0.98046 |
Target: 5'- ----gCGGAccuCGCACGgGCCGUGGAg -3' miRNA: 3'- cucaaGCUUuu-GCGUGCaCGGCGCCU- -5' |
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13940 | 5' | -52.8 | NC_003521.1 | + | 104951 | 0.68 | 0.98046 |
Target: 5'- cGGUuacUCGAa---GguCGUGCCGCGGGg -3' miRNA: 3'- cUCA---AGCUuuugCguGCACGGCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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