miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 5' -52.8 NC_003521.1 + 235856 0.66 0.991418
Target:  5'- cGAGUccgccucUCGuccuccCGCACGUcCCGCGGGu -3'
miRNA:   3'- -CUCA-------AGCuuuu--GCGUGCAcGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 233361 0.67 0.989064
Target:  5'- uGGGUgggGAGGGCgGCGCGaGCgGCGGAg -3'
miRNA:   3'- -CUCAag-CUUUUG-CGUGCaCGgCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 226067 0.71 0.909114
Target:  5'- ----aCGAAGGCGCGCcccgGCCGCGGc -3'
miRNA:   3'- cucaaGCUUUUGCGUGca--CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 226028 0.66 0.995138
Target:  5'- cGAGcgCGA--GCgGCGCGUGCUGCa-- -3'
miRNA:   3'- -CUCaaGCUuuUG-CGUGCACGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 225787 0.68 0.978257
Target:  5'- -cGUUCGucGACGCGCGacggcGCCgaGCGGGu -3'
miRNA:   3'- cuCAAGCuuUUGCGUGCa----CGG--CGCCU- -5'
13940 5' -52.8 NC_003521.1 + 224358 0.69 0.957478
Target:  5'- cGAGUUCGGcgaccgccGGCGCGCGcGCCcGcCGGAg -3'
miRNA:   3'- -CUCAAGCUu-------UUGCGUGCaCGG-C-GCCU- -5'
13940 5' -52.8 NC_003521.1 + 222594 0.66 0.991529
Target:  5'- -cGgaUGAAAACGCGCa-GCuCGCGGAa -3'
miRNA:   3'- cuCaaGCUUUUGCGUGcaCG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 214186 0.68 0.975876
Target:  5'- cAGUUCG--GugGCaACGUGCCGCa-- -3'
miRNA:   3'- cUCAAGCuuUugCG-UGCACGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 212714 0.67 0.989064
Target:  5'- uGGUUgaUGgcGugGCACGUGUCGCGa- -3'
miRNA:   3'- cUCAA--GCuuUugCGUGCACGGCGCcu -5'
13940 5' -52.8 NC_003521.1 + 209962 0.71 0.909114
Target:  5'- aGGGUUCGGAGAaGU---UGCCGCGGAc -3'
miRNA:   3'- -CUCAAGCUUUUgCGugcACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 209580 0.72 0.876302
Target:  5'- gGGGUcCGggGGCGCACGUa--GCGGAg -3'
miRNA:   3'- -CUCAaGCuuUUGCGUGCAcggCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 198540 0.67 0.990358
Target:  5'- ----cCGAuGACuGCugGUGCCGCuGGGa -3'
miRNA:   3'- cucaaGCUuUUG-CGugCACGGCG-CCU- -5'
13940 5' -52.8 NC_003521.1 + 193027 0.66 0.995138
Target:  5'- gGAGaUCGAGcuGAUGgACG-GCCcGCGGAc -3'
miRNA:   3'- -CUCaAGCUU--UUGCgUGCaCGG-CGCCU- -5'
13940 5' -52.8 NC_003521.1 + 192118 0.66 0.99228
Target:  5'- ---aUCGAcaacaucuuagacgAGGCGCugaggaACGUGCUGCGGGa -3'
miRNA:   3'- cucaAGCU--------------UUUGCG------UGCACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 180818 0.69 0.952885
Target:  5'- -cGUUCGAaggccucuuugggAAACguguauuGCACGUaGCCGCGGGu -3'
miRNA:   3'- cuCAAGCU-------------UUUG-------CGUGCA-CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 168979 0.7 0.949645
Target:  5'- ---gUCGccGACGCGCGUcgGUCGCGGGa -3'
miRNA:   3'- cucaAGCuuUUGCGUGCA--CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 160761 0.66 0.992585
Target:  5'- uGGUUUuccuuuCGCGCGUGCCGcCGGc -3'
miRNA:   3'- cUCAAGcuuuu-GCGUGCACGGC-GCCu -5'
13940 5' -52.8 NC_003521.1 + 157953 0.66 0.994382
Target:  5'- ---cUCGAAGACgaGCGCGUGCgCGCa-- -3'
miRNA:   3'- cucaAGCUUUUG--CGUGCACG-GCGccu -5'
13940 5' -52.8 NC_003521.1 + 154673 0.67 0.98418
Target:  5'- -----gGggGACGCGCGUGCCcgccuccugauugGCGGc -3'
miRNA:   3'- cucaagCuuUUGCGUGCACGG-------------CGCCu -5'
13940 5' -52.8 NC_003521.1 + 154636 0.67 0.990358
Target:  5'- cGGcUUCGucAGCaaGCACGUGCCGCuGGc -3'
miRNA:   3'- cUC-AAGCuuUUG--CGUGCACGGCG-CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.