miRNA display CGI


Results 61 - 80 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 223411 0.66 0.961291
Target:  5'- gUGGCGCCC-CGGCG-CGGCGUCAa- -3'
miRNA:   3'- gACUGUGGGuGCUGCaGUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 239379 0.66 0.961291
Target:  5'- gCUGcCACCgGCGGCG-CAGC-UCGCg -3'
miRNA:   3'- -GACuGUGGgUGCUGCaGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 28839 0.66 0.961291
Target:  5'- -cGGCGCCUggACGACGagcugCGGCGgCGCg -3'
miRNA:   3'- gaCUGUGGG--UGCUGCa----GUCGUgGUGa -5'
13941 5' -55.7 NC_003521.1 + 153113 0.66 0.961291
Target:  5'- -gGGCGCgCGCGACGgCAGCAggcggcuuugguCCACc -3'
miRNA:   3'- gaCUGUGgGUGCUGCaGUCGU------------GGUGa -5'
13941 5' -55.7 NC_003521.1 + 120928 0.66 0.957785
Target:  5'- -cGGCuGCCCGCGGCGgCGGCuCCGg- -3'
miRNA:   3'- gaCUG-UGGGUGCUGCaGUCGuGGUga -5'
13941 5' -55.7 NC_003521.1 + 143544 0.66 0.957785
Target:  5'- -cGcCGCCgGCGACGagCAGCAgCCGCc -3'
miRNA:   3'- gaCuGUGGgUGCUGCa-GUCGU-GGUGa -5'
13941 5' -55.7 NC_003521.1 + 82890 0.66 0.957785
Target:  5'- -cGGCACCCGCuguuGGCG-CGuCGCCACUc -3'
miRNA:   3'- gaCUGUGGGUG----CUGCaGUcGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 77396 0.66 0.957785
Target:  5'- gUGGCACCCugGuaggcaGCGgCAGCcgacgacgggGCCACg -3'
miRNA:   3'- gACUGUGGGugC------UGCaGUCG----------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 198254 0.66 0.957785
Target:  5'- gCUGACGCCgcaGCGAuagcCGUCccagcGGCACCAg- -3'
miRNA:   3'- -GACUGUGGg--UGCU----GCAG-----UCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 71051 0.66 0.957785
Target:  5'- --aGCGCCCAaaGCG-CGGCGCCAUg -3'
miRNA:   3'- gacUGUGGGUgcUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 63061 0.67 0.950135
Target:  5'- cCUGGCGacgaCCGCGAcccCGUaCAGCugCGCc -3'
miRNA:   3'- -GACUGUg---GGUGCU---GCA-GUCGugGUGa -5'
13941 5' -55.7 NC_003521.1 + 54502 0.67 0.938883
Target:  5'- -cGGCGgCC-CGGCGUggaccaggaucugcaCGGCGCCGCUg -3'
miRNA:   3'- gaCUGUgGGuGCUGCA---------------GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 145822 0.67 0.950135
Target:  5'- -cGACGCCaaacacCugGACGaCGGCACUAUUa -3'
miRNA:   3'- gaCUGUGG------GugCUGCaGUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 73838 0.67 0.945985
Target:  5'- gCUGACGgCCgagggaACGACGUCA--ACCACa -3'
miRNA:   3'- -GACUGUgGG------UGCUGCAGUcgUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 187072 0.67 0.950135
Target:  5'- uCUGGuCGCCCACGcCGU-GGCGCCu-- -3'
miRNA:   3'- -GACU-GUGGGUGCuGCAgUCGUGGuga -5'
13941 5' -55.7 NC_003521.1 + 74147 0.67 0.941613
Target:  5'- gUGGCGCgCCACGGgGcccaGGUGCCGCUg -3'
miRNA:   3'- gACUGUG-GGUGCUgCag--UCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 35044 0.67 0.941613
Target:  5'- --cACGCUCAUGcCGUgCGGCGCCACc -3'
miRNA:   3'- gacUGUGGGUGCuGCA-GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 220001 0.67 0.950135
Target:  5'- -aGACugguCCCGCGACGgcgCGGUcccuCCGCg -3'
miRNA:   3'- gaCUGu---GGGUGCUGCa--GUCGu---GGUGa -5'
13941 5' -55.7 NC_003521.1 + 226792 0.67 0.950135
Target:  5'- --cACGCCCuACGugGuguuUCAGgGCCGCUa -3'
miRNA:   3'- gacUGUGGG-UGCugC----AGUCgUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 7341 0.67 0.950135
Target:  5'- cCUGGC-CUCGCGGC-UCAaCACCACa -3'
miRNA:   3'- -GACUGuGGGUGCUGcAGUcGUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.