miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 227422 0.66 0.970306
Target:  5'- uCUGACACCCccacaACGACGcCcGCccggauuuuaaaaACCGCa -3'
miRNA:   3'- -GACUGUGGG-----UGCUGCaGuCG-------------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 36168 0.66 0.970587
Target:  5'- -gGACACCCcggACGGCGU--GC-CCACg -3'
miRNA:   3'- gaCUGUGGG---UGCUGCAguCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 115403 0.66 0.967687
Target:  5'- -gGGCGgCCGCcACGgccuccggacUCAGCGCCGCg -3'
miRNA:   3'- gaCUGUgGGUGcUGC----------AGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 112979 0.66 0.96459
Target:  5'- aUGcCGCUCAgCGGCG--GGCGCCACUa -3'
miRNA:   3'- gACuGUGGGU-GCUGCagUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 113440 0.66 0.967687
Target:  5'- cCUGACGCCCugGuACG-C-GCGCgACc -3'
miRNA:   3'- -GACUGUGGGugC-UGCaGuCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 164708 0.66 0.957785
Target:  5'- gUGACGgCCGCGGCcgcggUGGCGCUGCUa -3'
miRNA:   3'- gACUGUgGGUGCUGca---GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 34861 0.66 0.967687
Target:  5'- -aGcCGCCCACcACGUagaAGCACUGCg -3'
miRNA:   3'- gaCuGUGGGUGcUGCAg--UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 125287 0.66 0.961291
Target:  5'- -gGAUACCCGCGgauGCG-CAGC-CUGCUg -3'
miRNA:   3'- gaCUGUGGGUGC---UGCaGUCGuGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 35219 0.66 0.96427
Target:  5'- uCUGGCcgaccucugcguGCgCCGCGACuacgaggGUCuGCGCCGCUa -3'
miRNA:   3'- -GACUG------------UG-GGUGCUG-------CAGuCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 180265 0.66 0.970587
Target:  5'- -cGACGaggaugCCACGACGgCGGC-CCGCg -3'
miRNA:   3'- gaCUGUg-----GGUGCUGCaGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 113351 0.66 0.961291
Target:  5'- cCUG-CACCCgGCGGcCGUCuGCGCCuCg -3'
miRNA:   3'- -GACuGUGGG-UGCU-GCAGuCGUGGuGa -5'
13941 5' -55.7 NC_003521.1 + 98742 0.66 0.957785
Target:  5'- -cGuuGCCCACGACGac--CACCACUa -3'
miRNA:   3'- gaCugUGGGUGCUGCagucGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 201937 0.66 0.961291
Target:  5'- gCUGcCACCgGCGGCG-CAGC-UCGCg -3'
miRNA:   3'- -GACuGUGGgUGCUGCaGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 121883 0.66 0.961291
Target:  5'- gUGGCGCugcgCCAgGugGUgAGCGCCAg- -3'
miRNA:   3'- gACUGUG----GGUgCugCAgUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 239600 0.66 0.954068
Target:  5'- -aGACGCCCG-GACGaCuGCGCCAa- -3'
miRNA:   3'- gaCUGUGGGUgCUGCaGuCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 138236 0.66 0.957785
Target:  5'- -gGACACagcgCACcACGUCGGCauACCACa -3'
miRNA:   3'- gaCUGUGg---GUGcUGCAGUCG--UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 126035 0.66 0.962636
Target:  5'- -cGGCugCCugaGCGACGUgcuguacaacacgaGGCACCGCg -3'
miRNA:   3'- gaCUGugGG---UGCUGCAg-------------UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 239269 0.66 0.954068
Target:  5'- --uGCAgCCACGACGUCuccucAGCAUgGCg -3'
miRNA:   3'- gacUGUgGGUGCUGCAG-----UCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 145864 0.66 0.967687
Target:  5'- -gGGC-CCgGCGGCGggCGGCGCCGa- -3'
miRNA:   3'- gaCUGuGGgUGCUGCa-GUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 226896 0.66 0.96459
Target:  5'- -gGGCA-CCACGGCGgcCAGCGCgGCc -3'
miRNA:   3'- gaCUGUgGGUGCUGCa-GUCGUGgUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.