miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 49751 0.66 0.96459
Target:  5'- cCUGGCGCCCAguAUGUCgcaguucuGGCACgGCg -3'
miRNA:   3'- -GACUGUGGGUgcUGCAG--------UCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 54502 0.67 0.938883
Target:  5'- -cGGCGgCC-CGGCGUggaccaggaucugcaCGGCGCCGCUg -3'
miRNA:   3'- gaCUGUgGGuGCUGCA---------------GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 57377 0.76 0.511199
Target:  5'- gUGACGCgCCAgGGCGUCGaucucGCGCCACa -3'
miRNA:   3'- gACUGUG-GGUgCUGCAGU-----CGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 58715 0.68 0.904728
Target:  5'- uUGACgcaGCCCaccgucuccagGCGGCGgugCAGCAgCCACUg -3'
miRNA:   3'- gACUG---UGGG-----------UGCUGCa--GUCGU-GGUGA- -5'
13941 5' -55.7 NC_003521.1 + 59104 0.67 0.950135
Target:  5'- -gGGCAUCCGCGccaguaACGUCAcgGCcGCCACg -3'
miRNA:   3'- gaCUGUGGGUGC------UGCAGU--CG-UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 59435 0.74 0.638374
Target:  5'- cCUGACuGCCCGCGGCG-CcGUGCCGCa -3'
miRNA:   3'- -GACUG-UGGGUGCUGCaGuCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 59969 0.71 0.764338
Target:  5'- -gGAacaaAUCCGCGACGUCAGCuACCGg- -3'
miRNA:   3'- gaCUg---UGGGUGCUGCAGUCG-UGGUga -5'
13941 5' -55.7 NC_003521.1 + 60599 0.72 0.745716
Target:  5'- -cGAgGCCCAC-ACGcgCGGCACCACc -3'
miRNA:   3'- gaCUgUGGGUGcUGCa-GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 63021 0.69 0.885584
Target:  5'- -cGGCGCCCACGACG-Cc-CACCAg- -3'
miRNA:   3'- gaCUGUGGGUGCUGCaGucGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 63061 0.67 0.950135
Target:  5'- cCUGGCGacgaCCGCGAcccCGUaCAGCugCGCc -3'
miRNA:   3'- -GACUGUg---GGUGCU---GCA-GUCGugGUGa -5'
13941 5' -55.7 NC_003521.1 + 63811 0.7 0.825596
Target:  5'- -cGACAUCCACGAUaUCGGUAgCACc -3'
miRNA:   3'- gaCUGUGGGUGCUGcAGUCGUgGUGa -5'
13941 5' -55.7 NC_003521.1 + 64757 0.69 0.878775
Target:  5'- -aGACGCCgGcCGGCG-CGGCACCGg- -3'
miRNA:   3'- gaCUGUGGgU-GCUGCaGUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 64977 0.66 0.954068
Target:  5'- gUGACcUCgCACGACGaCGuGCGCCGCUu -3'
miRNA:   3'- gACUGuGG-GUGCUGCaGU-CGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 65132 0.67 0.937019
Target:  5'- ----aGCUCGCGcACGUCGGCGcCCACg -3'
miRNA:   3'- gacugUGGGUGC-UGCAGUCGU-GGUGa -5'
13941 5' -55.7 NC_003521.1 + 67302 0.68 0.921886
Target:  5'- cCUGACGCCCgACGAguucugcauCGUCAugACCACc -3'
miRNA:   3'- -GACUGUGGG-UGCU---------GCAGUcgUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 68416 0.67 0.937019
Target:  5'- -cGGguCCCGCGGCGaCGGCuCCGCc -3'
miRNA:   3'- gaCUguGGGUGCUGCaGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 68532 0.68 0.91067
Target:  5'- -cGACACCgGaCGGCGgCAGCgGCCGCc -3'
miRNA:   3'- gaCUGUGGgU-GCUGCaGUCG-UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 69198 0.72 0.745716
Target:  5'- -aGACAUaCC-CGACGUCGGCGgCACUc -3'
miRNA:   3'- gaCUGUG-GGuGCUGCAGUCGUgGUGA- -5'
13941 5' -55.7 NC_003521.1 + 69854 0.68 0.898564
Target:  5'- aUGACGCgccgaugaggCCGCcGCG-CAGCGCCACg -3'
miRNA:   3'- gACUGUG----------GGUGcUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 70679 0.77 0.46491
Target:  5'- gCUGGaaaACCgACGGCGUCuGCGCCGCa -3'
miRNA:   3'- -GACUg--UGGgUGCUGCAGuCGUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.