miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 33495 0.71 0.782517
Target:  5'- -gGGCGCCaCGCGAgCGUCcGGCACgCACUc -3'
miRNA:   3'- gaCUGUGG-GUGCU-GCAG-UCGUG-GUGA- -5'
13941 5' -55.7 NC_003521.1 + 33743 0.69 0.892181
Target:  5'- gUGGCGCCCGaGAUcugggucuccaGUCAGgGCCACg -3'
miRNA:   3'- gACUGUGGGUgCUG-----------CAGUCgUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 34696 0.67 0.937019
Target:  5'- --aGCGCCUACGugGagUC-GCACCGCg -3'
miRNA:   3'- gacUGUGGGUGCugC--AGuCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 34841 0.67 0.945558
Target:  5'- cCUG-CAgCC-CGGCGUCAGCcuggugcaccccgACCACa -3'
miRNA:   3'- -GACuGUgGGuGCUGCAGUCG-------------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 34861 0.66 0.967687
Target:  5'- -aGcCGCCCACcACGUagaAGCACUGCg -3'
miRNA:   3'- gaCuGUGGGUGcUGCAg--UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 35044 0.67 0.941613
Target:  5'- --cACGCUCAUGcCGUgCGGCGCCACc -3'
miRNA:   3'- gacUGUGGGUGCuGCA-GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 35219 0.66 0.96427
Target:  5'- uCUGGCcgaccucugcguGCgCCGCGACuacgaggGUCuGCGCCGCUa -3'
miRNA:   3'- -GACUG------------UG-GGUGCUG-------CAGuCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 35761 0.71 0.794943
Target:  5'- -cGACACCCuacggcgccuccucgGCGGCGgCAGCugCGCc -3'
miRNA:   3'- gaCUGUGGG---------------UGCUGCaGUCGugGUGa -5'
13941 5' -55.7 NC_003521.1 + 36168 0.66 0.970587
Target:  5'- -gGACACCCcggACGGCGU--GC-CCACg -3'
miRNA:   3'- gaCUGUGGG---UGCUGCAguCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 36526 0.71 0.791419
Target:  5'- gUGACGCCCAaauCGUCcAGCGCCGa- -3'
miRNA:   3'- gACUGUGGGUgcuGCAG-UCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 37721 0.68 0.908911
Target:  5'- -gGugGCCCGCGcgcgagcccacaGCGUCaccuucagaggcucGGCGCCGCg -3'
miRNA:   3'- gaCugUGGGUGC------------UGCAG--------------UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 38704 0.72 0.755078
Target:  5'- aUGAUACUCGCgGGCGUCcugguGGCGCUACUu -3'
miRNA:   3'- gACUGUGGGUG-CUGCAG-----UCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 40490 0.68 0.927155
Target:  5'- -cGGCGCgCCACGGCGccgCAGCGCaucucgaACUc -3'
miRNA:   3'- gaCUGUG-GGUGCUGCa--GUCGUGg------UGA- -5'
13941 5' -55.7 NC_003521.1 + 42892 0.66 0.961291
Target:  5'- aUGAUgaauUCCAUGGCGgcgaCGGCGCCGCc -3'
miRNA:   3'- gACUGu---GGGUGCUGCa---GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 43433 0.7 0.857122
Target:  5'- gUGGCGCUCguGCGGCaG-CAGCGCCACc -3'
miRNA:   3'- gACUGUGGG--UGCUG-CaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 43562 0.7 0.833744
Target:  5'- -cGcCGCCgGCGccGCGUCaAGCACCGCUc -3'
miRNA:   3'- gaCuGUGGgUGC--UGCAG-UCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 46044 0.71 0.800187
Target:  5'- -aGGgGCgCCAUGACGUUGGCACCGg- -3'
miRNA:   3'- gaCUgUG-GGUGCUGCAGUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 46083 0.68 0.927155
Target:  5'- -cGACGCCC--GGCGUCgcagaccuuguAGCGCCGCc -3'
miRNA:   3'- gaCUGUGGGugCUGCAG-----------UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 49099 0.66 0.96459
Target:  5'- -cGAUAUCCacaaagugcGCGugGUgaccgCGGCGCCGCUg -3'
miRNA:   3'- gaCUGUGGG---------UGCugCA-----GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 49573 0.68 0.91639
Target:  5'- ---cCugCCGCGugGgccgCGGCGCCGCc -3'
miRNA:   3'- gacuGugGGUGCugCa---GUCGUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.