miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 226050 0.69 0.892181
Target:  5'- cCUGGCACCC-UGACGagCGGCGCgaGCg -3'
miRNA:   3'- -GACUGUGGGuGCUGCa-GUCGUGg-UGa -5'
13941 5' -55.7 NC_003521.1 + 225615 0.72 0.726717
Target:  5'- cCUGcaGC-CCCACGAUGUCGGgaucCACCACg -3'
miRNA:   3'- -GAC--UGuGGGUGCUGCAGUC----GUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 224997 0.69 0.871758
Target:  5'- gCUGGcCGCCUGCGuCGgcgAGCACCACg -3'
miRNA:   3'- -GACU-GUGGGUGCuGCag-UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 224485 0.71 0.781619
Target:  5'- gUGugGaCCGCGacuacggGCGUCAGUACCGCUg -3'
miRNA:   3'- gACugUgGGUGC-------UGCAGUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 224084 0.7 0.857122
Target:  5'- -aGGCGCCCGCGGUGgCGGCGgCGCa -3'
miRNA:   3'- gaCUGUGGGUGCUGCaGUCGUgGUGa -5'
13941 5' -55.7 NC_003521.1 + 224050 0.77 0.483175
Target:  5'- uCUGGCgGCCCACGGCGguaaCGGCGCCGa- -3'
miRNA:   3'- -GACUG-UGGGUGCUGCa---GUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 223659 0.73 0.707412
Target:  5'- -gGGCGCCaCACGgcccGCGUCggGGCGCCGCg -3'
miRNA:   3'- gaCUGUGG-GUGC----UGCAG--UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 223411 0.66 0.961291
Target:  5'- gUGGCGCCC-CGGCG-CGGCGUCAa- -3'
miRNA:   3'- gACUGUGGGuGCUGCaGUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 222358 0.68 0.921886
Target:  5'- -cGACACUCGCcGCG-CAGC-CCGCg -3'
miRNA:   3'- gaCUGUGGGUGcUGCaGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 221347 0.66 0.969738
Target:  5'- gUGGCGgUgACGGCGUCGGgcuuccacuucagcCACCGCUc -3'
miRNA:   3'- gACUGUgGgUGCUGCAGUC--------------GUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 221258 0.69 0.890879
Target:  5'- gCUGGCcaccuacacguucGCCCGCGACGUggagcugCAGCGCUcccuGCUg -3'
miRNA:   3'- -GACUG-------------UGGGUGCUGCA-------GUCGUGG----UGA- -5'
13941 5' -55.7 NC_003521.1 + 221075 0.66 0.967687
Target:  5'- gCUGAaguggaaGCCCgACGcCGUCAcCGCCACg -3'
miRNA:   3'- -GACUg------UGGG-UGCuGCAGUcGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 220001 0.67 0.950135
Target:  5'- -aGACugguCCCGCGACGgcgCGGUcccuCCGCg -3'
miRNA:   3'- gaCUGu---GGGUGCUGCa--GUCGu---GGUGa -5'
13941 5' -55.7 NC_003521.1 + 218727 0.71 0.791419
Target:  5'- aCUG-CGCCCACGGCGU-GGUGCCGg- -3'
miRNA:   3'- -GACuGUGGGUGCUGCAgUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 217815 0.66 0.96459
Target:  5'- aUGACGgCgaGCGACGU--GCACCGCUu -3'
miRNA:   3'- gACUGUgGg-UGCUGCAguCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 214681 0.72 0.717099
Target:  5'- -cGuCACCCACGcCGUCucuAGCGCCAUUc -3'
miRNA:   3'- gaCuGUGGGUGCuGCAG---UCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 214348 0.76 0.539874
Target:  5'- cCUGACGCCCgugAUGugGUCGGCG-CGCUg -3'
miRNA:   3'- -GACUGUGGG---UGCugCAGUCGUgGUGA- -5'
13941 5' -55.7 NC_003521.1 + 211838 0.72 0.745716
Target:  5'- -gGACACCgcCGCGAgCGUgCGGCGCUACUg -3'
miRNA:   3'- gaCUGUGG--GUGCU-GCA-GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 210917 0.66 0.957423
Target:  5'- uUGACGgCCACGGgucgucggucguCGUCgcccaggugcaacAGCGCCACg -3'
miRNA:   3'- gACUGUgGGUGCU------------GCAG-------------UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 210275 0.66 0.970587
Target:  5'- uCUGugGCCgGCG-CGUCcGUACCGu- -3'
miRNA:   3'- -GACugUGGgUGCuGCAGuCGUGGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.