miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 210917 0.66 0.957423
Target:  5'- uUGACGgCCACGGgucgucggucguCGUCgcccaggugcaacAGCGCCACg -3'
miRNA:   3'- gACUGUgGGUGCU------------GCAG-------------UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 226896 0.66 0.96459
Target:  5'- -gGGCA-CCACGGCGgcCAGCGCgGCc -3'
miRNA:   3'- gaCUGUgGGUGCUGCa-GUCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 180265 0.66 0.970587
Target:  5'- -cGACGaggaugCCACGACGgCGGC-CCGCg -3'
miRNA:   3'- gaCUGUg-----GGUGCUGCaGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 210275 0.66 0.970587
Target:  5'- uCUGugGCCgGCG-CGUCcGUACCGu- -3'
miRNA:   3'- -GACugUGGgUGCuGCAGuCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 80103 0.66 0.96459
Target:  5'- -cGGCGCgaCCACGAUGUUgggAGCGCC-CUu -3'
miRNA:   3'- gaCUGUG--GGUGCUGCAG---UCGUGGuGA- -5'
13941 5' -55.7 NC_003521.1 + 147313 0.66 0.970587
Target:  5'- gUGAUACCCaccACGACGcgcuaGGCGCC-CUc -3'
miRNA:   3'- gACUGUGGG---UGCUGCag---UCGUGGuGA- -5'
13941 5' -55.7 NC_003521.1 + 153113 0.66 0.961291
Target:  5'- -gGGCGCgCGCGACGgCAGCAggcggcuuugguCCACc -3'
miRNA:   3'- gaCUGUGgGUGCUGCaGUCGU------------GGUGa -5'
13941 5' -55.7 NC_003521.1 + 162613 0.66 0.970587
Target:  5'- -cGACAgCCucCGACG--AGCGCCGCg -3'
miRNA:   3'- gaCUGUgGGu-GCUGCagUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 34861 0.66 0.967687
Target:  5'- -aGcCGCCCACcACGUagaAGCACUGCg -3'
miRNA:   3'- gaCuGUGGGUGcUGCAg--UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 227422 0.66 0.970306
Target:  5'- uCUGACACCCccacaACGACGcCcGCccggauuuuaaaaACCGCa -3'
miRNA:   3'- -GACUGUGGG-----UGCUGCaGuCG-------------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 113440 0.66 0.967687
Target:  5'- cCUGACGCCCugGuACG-C-GCGCgACc -3'
miRNA:   3'- -GACUGUGGGugC-UGCaGuCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 239600 0.66 0.954068
Target:  5'- -aGACGCCCG-GACGaCuGCGCCAa- -3'
miRNA:   3'- gaCUGUGGGUgCUGCaGuCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 112979 0.66 0.96459
Target:  5'- aUGcCGCUCAgCGGCG--GGCGCCACUa -3'
miRNA:   3'- gACuGUGGGU-GCUGCagUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 49099 0.66 0.96459
Target:  5'- -cGAUAUCCacaaagugcGCGugGUgaccgCGGCGCCGCUg -3'
miRNA:   3'- gaCUGUGGG---------UGCugCA-----GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 103462 0.66 0.96427
Target:  5'- --uGCGCgCCACGGCGUaggcgacgaacugCGGCACgCGCUg -3'
miRNA:   3'- gacUGUG-GGUGCUGCA-------------GUCGUG-GUGA- -5'
13941 5' -55.7 NC_003521.1 + 76713 0.66 0.967687
Target:  5'- gUGGCACCgGCGGCGgCAGUAaagACUa -3'
miRNA:   3'- gACUGUGGgUGCUGCaGUCGUgg-UGA- -5'
13941 5' -55.7 NC_003521.1 + 71051 0.66 0.957785
Target:  5'- --aGCGCCCAaaGCG-CGGCGCCAUg -3'
miRNA:   3'- gacUGUGGGUgcUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 77396 0.66 0.957785
Target:  5'- gUGGCACCCugGuaggcaGCGgCAGCcgacgacgggGCCACg -3'
miRNA:   3'- gACUGUGGGugC------UGCaGUCG----------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 100980 0.66 0.970587
Target:  5'- -cGGCGCgCACGGCGUUcuCGCuCGCUg -3'
miRNA:   3'- gaCUGUGgGUGCUGCAGucGUG-GUGA- -5'
13941 5' -55.7 NC_003521.1 + 115403 0.66 0.967687
Target:  5'- -gGGCGgCCGCcACGgccuccggacUCAGCGCCGCg -3'
miRNA:   3'- gaCUGUgGGUGcUGC----------AGUCGUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.