miRNA display CGI


Results 21 - 40 of 272 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 239773 0.73 0.658238
Target:  5'- -cGGCGCCgGCGACGU-GGCGCgGCUg -3'
miRNA:   3'- gaCUGUGGgUGCUGCAgUCGUGgUGA- -5'
13941 5' -55.7 NC_003521.1 + 201543 0.73 0.658238
Target:  5'- -cGGCGCCgGCGACGU-GGCGCgGCUg -3'
miRNA:   3'- gaCUGUGGgUGCUGCAgUCGUGgUGA- -5'
13941 5' -55.7 NC_003521.1 + 226655 0.73 0.668144
Target:  5'- gUGACguggugcacacgGCCCugcgGCGGCGUCAGCcGCCGCUc -3'
miRNA:   3'- gACUG------------UGGG----UGCUGCAGUCG-UGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 118276 0.73 0.668144
Target:  5'- -cGGCACCaGCGGCGguagCAGCAgCACUa -3'
miRNA:   3'- gaCUGUGGgUGCUGCa---GUCGUgGUGA- -5'
13941 5' -55.7 NC_003521.1 + 149930 0.73 0.678022
Target:  5'- -cGGgGCCCACGAUGUCgGGCAgcCCGCa -3'
miRNA:   3'- gaCUgUGGGUGCUGCAG-UCGU--GGUGa -5'
13941 5' -55.7 NC_003521.1 + 104315 0.73 0.697664
Target:  5'- gCUGGCGCagACGGCGUCggAGCACUGCg -3'
miRNA:   3'- -GACUGUGggUGCUGCAG--UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 77677 0.73 0.697664
Target:  5'- -cGugGCCC-CGuCGUCGGCuGCCGCUg -3'
miRNA:   3'- gaCugUGGGuGCuGCAGUCG-UGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 74032 0.73 0.697664
Target:  5'- gUGGCGCUCAUGACGcCGGUGCCGg- -3'
miRNA:   3'- gACUGUGGGUGCUGCaGUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 127285 0.73 0.707412
Target:  5'- -gGGCACCgCgGCGGCGUCgucgGGCACCGCc -3'
miRNA:   3'- gaCUGUGG-G-UGCUGCAG----UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 135440 0.73 0.707412
Target:  5'- uUGGCGCCCGCGGgaacCGUCGGU-CCGCc -3'
miRNA:   3'- gACUGUGGGUGCU----GCAGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 223659 0.73 0.707412
Target:  5'- -gGGCGCCaCACGgcccGCGUCggGGCGCCGCg -3'
miRNA:   3'- gaCUGUGG-GUGC----UGCAG--UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 214681 0.72 0.717099
Target:  5'- -cGuCACCCACGcCGUCucuAGCGCCAUUc -3'
miRNA:   3'- gaCuGUGGGUGCuGCAG---UCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 225615 0.72 0.726717
Target:  5'- cCUGcaGC-CCCACGAUGUCGGgaucCACCACg -3'
miRNA:   3'- -GAC--UGuGGGUGCUGCAGUC----GUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 126785 0.72 0.726717
Target:  5'- cCUGGCGCUgCGCGugGUCcAGCuCCGCg -3'
miRNA:   3'- -GACUGUGG-GUGCugCAG-UCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 204338 0.72 0.726717
Target:  5'- -cGugGCCCACGACGUgUGGUGCgACUg -3'
miRNA:   3'- gaCugUGGGUGCUGCA-GUCGUGgUGA- -5'
13941 5' -55.7 NC_003521.1 + 111175 0.72 0.726717
Target:  5'- -cGGcCGCCC-CGGCGaCGGCGCCGCg -3'
miRNA:   3'- gaCU-GUGGGuGCUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 226744 0.72 0.726717
Target:  5'- -cGACACCCGCGAC--CAGUACCugguGCUg -3'
miRNA:   3'- gaCUGUGGGUGCUGcaGUCGUGG----UGA- -5'
13941 5' -55.7 NC_003521.1 + 122513 0.72 0.745716
Target:  5'- -aGACGCCCAgCGACGU-GGCGgCGCUc -3'
miRNA:   3'- gaCUGUGGGU-GCUGCAgUCGUgGUGA- -5'
13941 5' -55.7 NC_003521.1 + 60599 0.72 0.745716
Target:  5'- -cGAgGCCCAC-ACGcgCGGCACCACc -3'
miRNA:   3'- gaCUgUGGGUGcUGCa-GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 69198 0.72 0.745716
Target:  5'- -aGACAUaCC-CGACGUCGGCGgCACUc -3'
miRNA:   3'- gaCUGUG-GGuGCUGCAGUCGUgGUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.