miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 60599 0.72 0.745716
Target:  5'- -cGAgGCCCAC-ACGcgCGGCACCACc -3'
miRNA:   3'- gaCUgUGGGUGcUGCa-GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 3704 0.72 0.755078
Target:  5'- cCUG-UGCCCuCGGCGUCGGCAUgGCg -3'
miRNA:   3'- -GACuGUGGGuGCUGCAGUCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 32702 0.72 0.755078
Target:  5'- uCUGACGCCCAucCGuaacCGUCAggaggccguGCGCCACg -3'
miRNA:   3'- -GACUGUGGGU--GCu---GCAGU---------CGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 38704 0.72 0.755078
Target:  5'- aUGAUACUCGCgGGCGUCcugguGGCGCUACUu -3'
miRNA:   3'- gACUGUGGGUG-CUGCAG-----UCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 118182 0.72 0.755078
Target:  5'- -cGACGCCCGcCGGCaaaGUCGGgGCCGCc -3'
miRNA:   3'- gaCUGUGGGU-GCUG---CAGUCgUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 32879 0.72 0.755078
Target:  5'- uUGGCGCCCGCGcCGcCGGUGCUGCc -3'
miRNA:   3'- gACUGUGGGUGCuGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 137963 0.72 0.755078
Target:  5'- gCUGGCGCagcgCGCGGCGgugcugCAGCACCAg- -3'
miRNA:   3'- -GACUGUGg---GUGCUGCa-----GUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 76052 0.72 0.755078
Target:  5'- aUGguGCugCCGCGGCGUCuGCACCu-- -3'
miRNA:   3'- gAC--UGugGGUGCUGCAGuCGUGGuga -5'
13941 5' -55.7 NC_003521.1 + 59969 0.71 0.764338
Target:  5'- -gGAacaaAUCCGCGACGUCAGCuACCGg- -3'
miRNA:   3'- gaCUg---UGGGUGCUGCAGUCG-UGGUga -5'
13941 5' -55.7 NC_003521.1 + 146142 0.71 0.773487
Target:  5'- -cGGCGgCCuCGuCGUCGGCGCCGCc -3'
miRNA:   3'- gaCUGUgGGuGCuGCAGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 186848 0.71 0.773487
Target:  5'- aUGGCgGCCCagcgGCGGCGUgCAGCACgGCUc -3'
miRNA:   3'- gACUG-UGGG----UGCUGCA-GUCGUGgUGA- -5'
13941 5' -55.7 NC_003521.1 + 224485 0.71 0.781619
Target:  5'- gUGugGaCCGCGacuacggGCGUCAGUACCGCUg -3'
miRNA:   3'- gACugUgGGUGC-------UGCAGUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 33495 0.71 0.782517
Target:  5'- -gGGCGCCaCGCGAgCGUCcGGCACgCACUc -3'
miRNA:   3'- gaCUGUGG-GUGCU-GCAG-UCGUG-GUGA- -5'
13941 5' -55.7 NC_003521.1 + 188140 0.71 0.782517
Target:  5'- gCUGGCACCgC-CGACGcugcCGGUGCCGCUg -3'
miRNA:   3'- -GACUGUGG-GuGCUGCa---GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 226380 0.71 0.782517
Target:  5'- gCUGACGCCgccgCAgGGcCGUguGCACCACg -3'
miRNA:   3'- -GACUGUGG----GUgCU-GCAguCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 103547 0.71 0.782517
Target:  5'- -gGugGCCUACGACGagaCGGCGCCGg- -3'
miRNA:   3'- gaCugUGGGUGCUGCa--GUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 114761 0.71 0.782517
Target:  5'- -cGGCGgCCACGACGgaCAGCACC-Ca -3'
miRNA:   3'- gaCUGUgGGUGCUGCa-GUCGUGGuGa -5'
13941 5' -55.7 NC_003521.1 + 19032 0.71 0.787874
Target:  5'- -gGGCACCagccgucgcagcaGCGAccCGUCGGCGCCACc -3'
miRNA:   3'- gaCUGUGGg------------UGCU--GCAGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 36526 0.71 0.791419
Target:  5'- gUGACGCCCAaauCGUCcAGCGCCGa- -3'
miRNA:   3'- gACUGUGGGUgcuGCAG-UCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 137482 0.71 0.791419
Target:  5'- -gGGCGCCgGCGuguCG-CGGCGCCGCg -3'
miRNA:   3'- gaCUGUGGgUGCu--GCaGUCGUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.