miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 114963 0.76 0.530251
Target:  5'- -cGGCugCUGCGGCGUCAGuCGCCugUu -3'
miRNA:   3'- gaCUGugGGUGCUGCAGUC-GUGGugA- -5'
13941 5' -55.7 NC_003521.1 + 57377 0.76 0.511199
Target:  5'- gUGACGCgCCAgGGCGUCGaucucGCGCCACa -3'
miRNA:   3'- gACUGUG-GGUgCUGCAGU-----CGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 70679 0.77 0.46491
Target:  5'- gCUGGaaaACCgACGGCGUCuGCGCCGCa -3'
miRNA:   3'- -GACUg--UGGgUGCUGCAGuCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 121614 0.77 0.46491
Target:  5'- gCUGGCGCUCACcaccuGGCG-CAGCGCCACg -3'
miRNA:   3'- -GACUGUGGGUG-----CUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 99615 0.79 0.379498
Target:  5'- cCUGcaGCGCCCgGCGGCG-CAGCGCCACg -3'
miRNA:   3'- -GAC--UGUGGG-UGCUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 225615 0.72 0.726717
Target:  5'- cCUGcaGC-CCCACGAUGUCGGgaucCACCACg -3'
miRNA:   3'- -GAC--UGuGGGUGCUGCAGUC----GUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 60599 0.72 0.745716
Target:  5'- -cGAgGCCCAC-ACGcgCGGCACCACc -3'
miRNA:   3'- gaCUgUGGGUGcUGCa-GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 128931 0.71 0.794943
Target:  5'- cCUGGCGCgCCAgCGuggcguucuccaccaGCGUCuGCACCACg -3'
miRNA:   3'- -GACUGUG-GGU-GC---------------UGCAGuCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 239467 0.71 0.791419
Target:  5'- -gGugGCCCGCGGCGcguUCAGCcCCAg- -3'
miRNA:   3'- gaCugUGGGUGCUGC---AGUCGuGGUga -5'
13941 5' -55.7 NC_003521.1 + 137482 0.71 0.791419
Target:  5'- -gGGCGCCgGCGuguCG-CGGCGCCGCg -3'
miRNA:   3'- gaCUGUGGgUGCu--GCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 36526 0.71 0.791419
Target:  5'- gUGACGCCCAaauCGUCcAGCGCCGa- -3'
miRNA:   3'- gACUGUGGGUgcuGCAG-UCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 226380 0.71 0.782517
Target:  5'- gCUGACGCCgccgCAgGGcCGUguGCACCACg -3'
miRNA:   3'- -GACUGUGG----GUgCU-GCAguCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 33495 0.71 0.782517
Target:  5'- -gGGCGCCaCGCGAgCGUCcGGCACgCACUc -3'
miRNA:   3'- gaCUGUGG-GUGCU-GCAG-UCGUG-GUGA- -5'
13941 5' -55.7 NC_003521.1 + 188140 0.71 0.782517
Target:  5'- gCUGGCACCgC-CGACGcugcCGGUGCCGCUg -3'
miRNA:   3'- -GACUGUGG-GuGCUGCa---GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 186848 0.71 0.773487
Target:  5'- aUGGCgGCCCagcgGCGGCGUgCAGCACgGCUc -3'
miRNA:   3'- gACUG-UGGG----UGCUGCA-GUCGUGgUGA- -5'
13941 5' -55.7 NC_003521.1 + 59969 0.71 0.764338
Target:  5'- -gGAacaaAUCCGCGACGUCAGCuACCGg- -3'
miRNA:   3'- gaCUg---UGGGUGCUGCAGUCG-UGGUga -5'
13941 5' -55.7 NC_003521.1 + 118182 0.72 0.755078
Target:  5'- -cGACGCCCGcCGGCaaaGUCGGgGCCGCc -3'
miRNA:   3'- gaCUGUGGGU-GCUG---CAGUCgUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 38704 0.72 0.755078
Target:  5'- aUGAUACUCGCgGGCGUCcugguGGCGCUACUu -3'
miRNA:   3'- gACUGUGGGUG-CUGCAG-----UCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 32879 0.72 0.755078
Target:  5'- uUGGCGCCCGCGcCGcCGGUGCUGCc -3'
miRNA:   3'- gACUGUGGGUGCuGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 69198 0.72 0.745716
Target:  5'- -aGACAUaCC-CGACGUCGGCGgCACUc -3'
miRNA:   3'- gaCUGUG-GGuGCUGCAGUCGUgGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.