miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 201937 0.66 0.961291
Target:  5'- gCUGcCACCgGCGGCG-CAGC-UCGCg -3'
miRNA:   3'- -GACuGUGGgUGCUGCaGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 239085 0.66 0.961291
Target:  5'- -cGaACACCCagggacACGGCGUCGcGCcCCACa -3'
miRNA:   3'- gaC-UGUGGG------UGCUGCAGU-CGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 113351 0.66 0.961291
Target:  5'- cCUG-CACCCgGCGGcCGUCuGCGCCuCg -3'
miRNA:   3'- -GACuGUGGG-UGCU-GCAGuCGUGGuGa -5'
13941 5' -55.7 NC_003521.1 + 42892 0.66 0.961291
Target:  5'- aUGAUgaauUCCAUGGCGgcgaCGGCGCCGCc -3'
miRNA:   3'- gACUGu---GGGUGCUGCa---GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 125287 0.66 0.961291
Target:  5'- -gGAUACCCGCGgauGCG-CAGC-CUGCUg -3'
miRNA:   3'- gaCUGUGGGUGC---UGCaGUCGuGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 17973 0.66 0.957785
Target:  5'- -cGGCACCCACGuGCGUugcCAGUAugugguccuCCGCg -3'
miRNA:   3'- gaCUGUGGGUGC-UGCA---GUCGU---------GGUGa -5'
13941 5' -55.7 NC_003521.1 + 138236 0.66 0.957785
Target:  5'- -gGACACagcgCACcACGUCGGCauACCACa -3'
miRNA:   3'- gaCUGUGg---GUGcUGCAGUCG--UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 109224 0.66 0.957785
Target:  5'- -gGugACCgACGugGUCauAGaCGCCACc -3'
miRNA:   3'- gaCugUGGgUGCugCAG--UC-GUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 179343 0.66 0.957785
Target:  5'- aCUGuCACCgACGACGggCAcGCGacCCGCUg -3'
miRNA:   3'- -GACuGUGGgUGCUGCa-GU-CGU--GGUGA- -5'
13941 5' -55.7 NC_003521.1 + 138109 0.66 0.957785
Target:  5'- uCUGGCggggcgGCCCagccGCGGCGUgAGCGCCu-- -3'
miRNA:   3'- -GACUG------UGGG----UGCUGCAgUCGUGGuga -5'
13941 5' -55.7 NC_003521.1 + 120928 0.66 0.957785
Target:  5'- -cGGCuGCCCGCGGCGgCGGCuCCGg- -3'
miRNA:   3'- gaCUG-UGGGUGCUGCaGUCGuGGUga -5'
13941 5' -55.7 NC_003521.1 + 71051 0.66 0.957785
Target:  5'- --aGCGCCCAaaGCG-CGGCGCCAUg -3'
miRNA:   3'- gacUGUGGGUgcUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 164708 0.66 0.957785
Target:  5'- gUGACGgCCGCGGCcgcggUGGCGCUGCUa -3'
miRNA:   3'- gACUGUgGGUGCUGca---GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 75818 0.66 0.957785
Target:  5'- -gGGCGCUgGCGuagccgcCGcCGGCGCCGCUg -3'
miRNA:   3'- gaCUGUGGgUGCu------GCaGUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 198254 0.66 0.957785
Target:  5'- gCUGACGCCgcaGCGAuagcCGUCccagcGGCACCAg- -3'
miRNA:   3'- -GACUGUGGg--UGCU----GCAG-----UCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 98742 0.66 0.957785
Target:  5'- -cGuuGCCCACGACGac--CACCACUa -3'
miRNA:   3'- gaCugUGGGUGCUGCagucGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 77396 0.66 0.957785
Target:  5'- gUGGCACCCugGuaggcaGCGgCAGCcgacgacgggGCCACg -3'
miRNA:   3'- gACUGUGGGugC------UGCaGUCG----------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 82890 0.66 0.957785
Target:  5'- -cGGCACCCGCuguuGGCG-CGuCGCCACUc -3'
miRNA:   3'- gaCUGUGGGUG----CUGCaGUcGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 143544 0.66 0.957785
Target:  5'- -cGcCGCCgGCGACGagCAGCAgCCGCc -3'
miRNA:   3'- gaCuGUGGgUGCUGCa-GUCGU-GGUGa -5'
13941 5' -55.7 NC_003521.1 + 128321 0.66 0.957423
Target:  5'- -cGGCAUCgGCGgcGCGUCGGCcacuucuACCGCg -3'
miRNA:   3'- gaCUGUGGgUGC--UGCAGUCG-------UGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.