miRNA display CGI


Results 61 - 80 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 105435 0.66 0.957423
Target:  5'- -gGGgGCCCagcgucgGCGGCGUCGuCACCACc -3'
miRNA:   3'- gaCUgUGGG-------UGCUGCAGUcGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 210917 0.66 0.957423
Target:  5'- uUGACGgCCACGGgucgucggucguCGUCgcccaggugcaacAGCGCCACg -3'
miRNA:   3'- gACUGUgGGUGCU------------GCAG-------------UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 71525 0.66 0.954068
Target:  5'- -cGACGCCgGcCGACGUCaccgAGCccGCCGCc -3'
miRNA:   3'- gaCUGUGGgU-GCUGCAG----UCG--UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 64977 0.66 0.954068
Target:  5'- gUGACcUCgCACGACGaCGuGCGCCGCUu -3'
miRNA:   3'- gACUGuGG-GUGCUGCaGU-CGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 136206 0.66 0.954068
Target:  5'- -aGGCGCCCGaGGCGUC-GCAcaucCCGCg -3'
miRNA:   3'- gaCUGUGGGUgCUGCAGuCGU----GGUGa -5'
13941 5' -55.7 NC_003521.1 + 4621 0.66 0.954068
Target:  5'- aUGACcucACCCGCucCGUCGGCuuuccuGCCACc -3'
miRNA:   3'- gACUG---UGGGUGcuGCAGUCG------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 202046 0.66 0.954068
Target:  5'- --uGCAgCCACGACGUCuccucAGCAUgGCg -3'
miRNA:   3'- gacUGUgGGUGCUGCAG-----UCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 201715 0.66 0.954068
Target:  5'- -aGACGCCCG-GACGaCuGCGCCAa- -3'
miRNA:   3'- gaCUGUGGGUgCUGCaGuCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 239600 0.66 0.954068
Target:  5'- -aGACGCCCG-GACGaCuGCGCCAa- -3'
miRNA:   3'- gaCUGUGGGUgCUGCaGuCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 239269 0.66 0.954068
Target:  5'- --uGCAgCCACGACGUCuccucAGCAUgGCg -3'
miRNA:   3'- gacUGUgGGUGCUGCAG-----UCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 7341 0.67 0.950135
Target:  5'- cCUGGC-CUCGCGGC-UCAaCACCACa -3'
miRNA:   3'- -GACUGuGGGUGCUGcAGUcGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 228576 0.67 0.950135
Target:  5'- -aGACGCCCuuGAgguUGUCGGCGugcCCGCa -3'
miRNA:   3'- gaCUGUGGGugCU---GCAGUCGU---GGUGa -5'
13941 5' -55.7 NC_003521.1 + 72773 0.67 0.950135
Target:  5'- --aGCACCCGC--CGUCGGCGgCACa -3'
miRNA:   3'- gacUGUGGGUGcuGCAGUCGUgGUGa -5'
13941 5' -55.7 NC_003521.1 + 127270 0.67 0.950135
Target:  5'- aUGGCGCCCA-GGCG-CGGCACguCc -3'
miRNA:   3'- gACUGUGGGUgCUGCaGUCGUGguGa -5'
13941 5' -55.7 NC_003521.1 + 63061 0.67 0.950135
Target:  5'- cCUGGCGacgaCCGCGAcccCGUaCAGCugCGCc -3'
miRNA:   3'- -GACUGUg---GGUGCU---GCA-GUCGugGUGa -5'
13941 5' -55.7 NC_003521.1 + 186807 0.67 0.950135
Target:  5'- -aGGCG-CCACGGCGUgGGCgACCAg- -3'
miRNA:   3'- gaCUGUgGGUGCUGCAgUCG-UGGUga -5'
13941 5' -55.7 NC_003521.1 + 59104 0.67 0.950135
Target:  5'- -gGGCAUCCGCGccaguaACGUCAcgGCcGCCACg -3'
miRNA:   3'- gaCUGUGGGUGC------UGCAGU--CG-UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 220001 0.67 0.950135
Target:  5'- -aGACugguCCCGCGACGgcgCGGUcccuCCGCg -3'
miRNA:   3'- gaCUGu---GGGUGCUGCa--GUCGu---GGUGa -5'
13941 5' -55.7 NC_003521.1 + 187072 0.67 0.950135
Target:  5'- uCUGGuCGCCCACGcCGU-GGCGCCu-- -3'
miRNA:   3'- -GACU-GUGGGUGCuGCAgUCGUGGuga -5'
13941 5' -55.7 NC_003521.1 + 119897 0.67 0.950135
Target:  5'- -gGACGCCCGCGgccaguggguaaACGUCcaccuGCAgCACg -3'
miRNA:   3'- gaCUGUGGGUGC------------UGCAGu----CGUgGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.