miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 239773 0.73 0.658238
Target:  5'- -cGGCGCCgGCGACGU-GGCGCgGCUg -3'
miRNA:   3'- gaCUGUGGgUGCUGCAgUCGUGgUGA- -5'
13941 5' -55.7 NC_003521.1 + 239600 0.66 0.954068
Target:  5'- -aGACGCCCG-GACGaCuGCGCCAa- -3'
miRNA:   3'- gaCUGUGGGUgCUGCaGuCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 239516 0.7 0.857122
Target:  5'- --cACACCCGCcgucgcugcuGACGgccgugCAGCGCCACa -3'
miRNA:   3'- gacUGUGGGUG----------CUGCa-----GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 239467 0.71 0.791419
Target:  5'- -gGugGCCCGCGGCGcguUCAGCcCCAg- -3'
miRNA:   3'- gaCugUGGGUGCUGC---AGUCGuGGUga -5'
13941 5' -55.7 NC_003521.1 + 239379 0.66 0.961291
Target:  5'- gCUGcCACCgGCGGCG-CAGC-UCGCg -3'
miRNA:   3'- -GACuGUGGgUGCUGCaGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 239269 0.66 0.954068
Target:  5'- --uGCAgCCACGACGUCuccucAGCAUgGCg -3'
miRNA:   3'- gacUGUgGGUGCUGCAG-----UCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 239239 0.68 0.927155
Target:  5'- gUGGCGCUgCACGGcCGUCAGCAgCgACg -3'
miRNA:   3'- gACUGUGG-GUGCU-GCAGUCGU-GgUGa -5'
13941 5' -55.7 NC_003521.1 + 239085 0.66 0.961291
Target:  5'- -cGaACACCCagggacACGGCGUCGcGCcCCACa -3'
miRNA:   3'- gaC-UGUGGG------UGCUGCAGU-CGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 238209 0.69 0.885584
Target:  5'- -aGGCcaagAgCCugGGCGUCGGCACgGCg -3'
miRNA:   3'- gaCUG----UgGGugCUGCAGUCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 235473 0.69 0.878775
Target:  5'- -cGACugCCACu-CGUCGcagucGCACCACa -3'
miRNA:   3'- gaCUGugGGUGcuGCAGU-----CGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 231248 0.68 0.91639
Target:  5'- --cGCACCCGCuGGCGUCaugauAGCACC-CUu -3'
miRNA:   3'- gacUGUGGGUG-CUGCAG-----UCGUGGuGA- -5'
13941 5' -55.7 NC_003521.1 + 228576 0.67 0.950135
Target:  5'- -aGACGCCCuuGAgguUGUCGGCGugcCCGCa -3'
miRNA:   3'- gaCUGUGGGugCU---GCAGUCGU---GGUGa -5'
13941 5' -55.7 NC_003521.1 + 228473 0.69 0.878775
Target:  5'- -cGACucGCCCACcACGccCAGCACCAUa -3'
miRNA:   3'- gaCUG--UGGGUGcUGCa-GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 227422 0.66 0.970306
Target:  5'- uCUGACACCCccacaACGACGcCcGCccggauuuuaaaaACCGCa -3'
miRNA:   3'- -GACUGUGGG-----UGCUGCaGuCG-------------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 226896 0.66 0.96459
Target:  5'- -gGGCA-CCACGGCGgcCAGCGCgGCc -3'
miRNA:   3'- gaCUGUgGGUGCUGCa-GUCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 226792 0.67 0.950135
Target:  5'- --cACGCCCuACGugGuguuUCAGgGCCGCUa -3'
miRNA:   3'- gacUGUGGG-UGCugC----AGUCgUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 226744 0.72 0.726717
Target:  5'- -cGACACCCGCGAC--CAGUACCugguGCUg -3'
miRNA:   3'- gaCUGUGGGUGCUGcaGUCGUGG----UGA- -5'
13941 5' -55.7 NC_003521.1 + 226655 0.73 0.668144
Target:  5'- gUGACguggugcacacgGCCCugcgGCGGCGUCAGCcGCCGCUc -3'
miRNA:   3'- gACUG------------UGGG----UGCUGCAGUCG-UGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 226601 0.7 0.857122
Target:  5'- -cGGCguaGCCCAgCGGCGUCAGgggcuCGCCGCa -3'
miRNA:   3'- gaCUG---UGGGU-GCUGCAGUC-----GUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 226380 0.71 0.782517
Target:  5'- gCUGACGCCgccgCAgGGcCGUguGCACCACg -3'
miRNA:   3'- -GACUGUGG----GUgCU-GCAguCGUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.