miRNA display CGI


Results 81 - 100 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 127270 0.67 0.950135
Target:  5'- aUGGCGCCCA-GGCG-CGGCACguCc -3'
miRNA:   3'- gACUGUGGGUgCUGCaGUCGUGguGa -5'
13941 5' -55.7 NC_003521.1 + 220001 0.67 0.950135
Target:  5'- -aGACugguCCCGCGACGgcgCGGUcccuCCGCg -3'
miRNA:   3'- gaCUGu---GGGUGCUGCa--GUCGu---GGUGa -5'
13941 5' -55.7 NC_003521.1 + 73838 0.67 0.945985
Target:  5'- gCUGACGgCCgagggaACGACGUCA--ACCACa -3'
miRNA:   3'- -GACUGUgGG------UGCUGCAGUcgUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 72697 0.67 0.945985
Target:  5'- ---cCACCCACGGCGcugucguccUCGGCGauCCACg -3'
miRNA:   3'- gacuGUGGGUGCUGC---------AGUCGU--GGUGa -5'
13941 5' -55.7 NC_003521.1 + 78479 0.67 0.945985
Target:  5'- gCUGcGCGCCCACGccCG-CAGuCGCCGCc -3'
miRNA:   3'- -GAC-UGUGGGUGCu-GCaGUC-GUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 148900 0.67 0.945985
Target:  5'- -cGACGCCgaggagcgccgcCGCGGCaUCgAGCACCGCa -3'
miRNA:   3'- gaCUGUGG------------GUGCUGcAG-UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 164055 0.67 0.945985
Target:  5'- uUGAgGCCgGCgGugGU-GGCGCCGCUa -3'
miRNA:   3'- gACUgUGGgUG-CugCAgUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 28885 0.67 0.945985
Target:  5'- uUGAUGaagACGGCGUgCAGCACCACg -3'
miRNA:   3'- gACUGUgggUGCUGCA-GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 106135 0.67 0.945985
Target:  5'- uCUG-CGCCCugauCGugGgCAcGCGCCACUu -3'
miRNA:   3'- -GACuGUGGGu---GCugCaGU-CGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 34841 0.67 0.945558
Target:  5'- cCUG-CAgCC-CGGCGUCAGCcuggugcaccccgACCACa -3'
miRNA:   3'- -GACuGUgGGuGCUGCAGUCG-------------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 35044 0.67 0.941613
Target:  5'- --cACGCUCAUGcCGUgCGGCGCCACc -3'
miRNA:   3'- gacUGUGGGUGCuGCA-GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 150982 0.67 0.941613
Target:  5'- -cGugGCCCACGGCcgagaGcCAGuCGCCGCc -3'
miRNA:   3'- gaCugUGGGUGCUG-----CaGUC-GUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 149158 0.67 0.941613
Target:  5'- -cGGCGCuCCuCGGCGUCGGcCACgGCc -3'
miRNA:   3'- gaCUGUG-GGuGCUGCAGUC-GUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 143040 0.67 0.941613
Target:  5'- gUGGCACCgACGACGc---CGCCGCg -3'
miRNA:   3'- gACUGUGGgUGCUGCagucGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 19143 0.67 0.941613
Target:  5'- -cGAgACCCACGGCGUgGugaccgagaGCACgGCg -3'
miRNA:   3'- gaCUgUGGGUGCUGCAgU---------CGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 74147 0.67 0.941613
Target:  5'- gUGGCGCgCCACGGgGcccaGGUGCCGCUg -3'
miRNA:   3'- gACUGUG-GGUGCUgCag--UCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 156697 0.67 0.941613
Target:  5'- -gGGCaagaGCCUGC-ACGUguGCACCACUa -3'
miRNA:   3'- gaCUG----UGGGUGcUGCAguCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 178942 0.67 0.941613
Target:  5'- -aGGCuuCCugGAgCGUCAGCugcgACCACg -3'
miRNA:   3'- gaCUGugGGugCU-GCAGUCG----UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 54502 0.67 0.938883
Target:  5'- -cGGCGgCC-CGGCGUggaccaggaucugcaCGGCGCCGCUg -3'
miRNA:   3'- gaCUGUgGGuGCUGCA---------------GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 34696 0.67 0.937019
Target:  5'- --aGCGCCUACGugGagUC-GCACCGCg -3'
miRNA:   3'- gacUGUGGGUGCugC--AGuCGUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.