Results 21 - 40 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13942 | 3' | -51 | NC_003521.1 | + | 89490 | 0.66 | 0.997428 |
Target: 5'- cUCCGCGCUg----GAGGUCgGCCGg- -3' miRNA: 3'- uAGGUGUGAaauaaUUCCGG-CGGCgu -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 223655 | 0.66 | 0.997294 |
Target: 5'- -gCCACACggcccgcgucGGGgCGCCGCGa -3' miRNA: 3'- uaGGUGUGaaauaau---UCCgGCGGCGU- -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 118233 | 0.67 | 0.993248 |
Target: 5'- cGUCguaGCGCUggugcu-GGCCGCCGCc -3' miRNA: 3'- -UAGg--UGUGAaauaauuCCGGCGGCGu -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 73100 | 0.67 | 0.994325 |
Target: 5'- -gCCGCGCcc-----AGGCCGUCGCGg -3' miRNA: 3'- uaGGUGUGaaauaauUCCGGCGGCGU- -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 163490 | 0.67 | 0.993982 |
Target: 5'- cGUCCGCGaguccc--AGGCCGCCGgAg -3' miRNA: 3'- -UAGGUGUgaaauaauUCCGGCGGCgU- -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 31886 | 0.67 | 0.992443 |
Target: 5'- -aCCGCACcgcc---AGGCCGCgGCAc -3' miRNA: 3'- uaGGUGUGaaauaauUCCGGCGgCGU- -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 223625 | 0.67 | 0.994325 |
Target: 5'- -gUCGCuGCUgacc-AAGGCCGCCGCc -3' miRNA: 3'- uaGGUG-UGAaauaaUUCCGGCGGCGu -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 43763 | 0.67 | 0.991332 |
Target: 5'- ---gGCGCUgacggAUguuGGCCGCCGCGg -3' miRNA: 3'- uaggUGUGAaa---UAauuCCGGCGGCGU- -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 164602 | 0.67 | 0.991332 |
Target: 5'- -gCCACGCcacc----GGCCGCCGCc -3' miRNA: 3'- uaGGUGUGaaauaauuCCGGCGGCGu -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 921 | 0.67 | 0.993438 |
Target: 5'- cUCCAaagacaACUag---AAGGCCGCUGCGa -3' miRNA: 3'- uAGGUg-----UGAaauaaUUCCGGCGGCGU- -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 223451 | 0.67 | 0.993438 |
Target: 5'- gGUCC-CuCUcgAgucuGGGCCGCCGCGc -3' miRNA: 3'- -UAGGuGuGAaaUaau-UCCGGCGGCGU- -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 179985 | 0.67 | 0.994325 |
Target: 5'- uGUUCAUGCUcucgc-GGGCCGCCGUc -3' miRNA: 3'- -UAGGUGUGAaauaauUCCGGCGGCGu -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 166432 | 0.67 | 0.991214 |
Target: 5'- cGUCCACGCacgUGUagaucgAGGGCgagccguCGCCGCAc -3' miRNA: 3'- -UAGGUGUGaa-AUAa-----UUCCG-------GCGGCGU- -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 227159 | 0.68 | 0.98858 |
Target: 5'- -gCCGCGCU-------GGCCGCCGUg -3' miRNA: 3'- uaGGUGUGAaauaauuCCGGCGGCGu -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 41983 | 0.68 | 0.990095 |
Target: 5'- -gCCGCGCcUUcUUAAGGUCGCaGCAg -3' miRNA: 3'- uaGGUGUGaAAuAAUUCCGGCGgCGU- -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 117202 | 0.68 | 0.988725 |
Target: 5'- cGUCCACGCU--GUUGcccagcAGGCCGuaGCu -3' miRNA: 3'- -UAGGUGUGAaaUAAU------UCCGGCggCGu -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 125999 | 0.68 | 0.988725 |
Target: 5'- uGUCCguGCACcgu-----GGCCGCCGCGu -3' miRNA: 3'- -UAGG--UGUGaaauaauuCCGGCGGCGU- -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 221920 | 0.68 | 0.987212 |
Target: 5'- -gCCACcCUUc---GGGGCUGCCGCGg -3' miRNA: 3'- uaGGUGuGAAauaaUUCCGGCGGCGU- -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 55860 | 0.69 | 0.981092 |
Target: 5'- gGUCCACGCUggcccgca-CCGCCGCGa -3' miRNA: 3'- -UAGGUGUGAaauaauuccGGCGGCGU- -5' |
|||||||
13942 | 3' | -51 | NC_003521.1 | + | 200388 | 0.69 | 0.973558 |
Target: 5'- uUCUGCACggcucc--GGCCGCCGCu -3' miRNA: 3'- uAGGUGUGaaauaauuCCGGCGGCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home