miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 3' -51 NC_003521.1 + 75711 0.66 0.995677
Target:  5'- cGUCCGCACcaca-----GCCGCCGCu -3'
miRNA:   3'- -UAGGUGUGaaauaauucCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 78898 0.66 0.996422
Target:  5'- gGUCCACGCgggccucgUAgacGGGGaaGCCGCGc -3'
miRNA:   3'- -UAGGUGUGaa------AUaa-UUCCggCGGCGU- -5'
13942 3' -51 NC_003521.1 + 87919 0.71 0.945925
Target:  5'- cUCCugGCU-------GGCCGCCGCGc -3'
miRNA:   3'- uAGGugUGAaauaauuCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 89490 0.66 0.997428
Target:  5'- cUCCGCGCUg----GAGGUCgGCCGg- -3'
miRNA:   3'- uAGGUGUGAaauaaUUCCGG-CGGCgu -5'
13942 3' -51 NC_003521.1 + 102435 0.69 0.97863
Target:  5'- gAUCCAgACgcgccgcAGGCCGCgGCAg -3'
miRNA:   3'- -UAGGUgUGaaauaauUCCGGCGgCGU- -5'
13942 3' -51 NC_003521.1 + 103512 0.72 0.915084
Target:  5'- aGUgCACGCgcgaaccgUUAUUcuuGGGCCGCCGCc -3'
miRNA:   3'- -UAgGUGUGa-------AAUAAu--UCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 117202 0.68 0.988725
Target:  5'- cGUCCACGCU--GUUGcccagcAGGCCGuaGCu -3'
miRNA:   3'- -UAGGUGUGAaaUAAU------UCCGGCggCGu -5'
13942 3' -51 NC_003521.1 + 118047 0.66 0.996858
Target:  5'- gGUCCGCAUUgcucuc-GGCCGCCa-- -3'
miRNA:   3'- -UAGGUGUGAaauaauuCCGGCGGcgu -5'
13942 3' -51 NC_003521.1 + 118233 0.67 0.993248
Target:  5'- cGUCguaGCGCUggugcu-GGCCGCCGCc -3'
miRNA:   3'- -UAGg--UGUGAaauaauuCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 120850 0.69 0.976944
Target:  5'- -gCCAUGCUggAcucggccUUGAGGCgGCCGCGc -3'
miRNA:   3'- uaGGUGUGAaaU-------AAUUCCGgCGGCGU- -5'
13942 3' -51 NC_003521.1 + 125892 0.69 0.976445
Target:  5'- gGUCCACGCccagcaugcacGAGGCCcgGCCGCGc -3'
miRNA:   3'- -UAGGUGUGaaauaa-----UUCCGG--CGGCGU- -5'
13942 3' -51 NC_003521.1 + 125999 0.68 0.988725
Target:  5'- uGUCCguGCACcgu-----GGCCGCCGCGu -3'
miRNA:   3'- -UAGG--UGUGaaauaauuCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 129780 0.66 0.996646
Target:  5'- uGUCCcgcGCACgugcgcgccGAGGCCGaCCGCGu -3'
miRNA:   3'- -UAGG---UGUGaaauaa---UUCCGGC-GGCGU- -5'
13942 3' -51 NC_003521.1 + 136558 0.72 0.920924
Target:  5'- cUCCACcuGCUUU-UUGAGGCgGUCGCGc -3'
miRNA:   3'- uAGGUG--UGAAAuAAUUCCGgCGGCGU- -5'
13942 3' -51 NC_003521.1 + 137822 0.66 0.997835
Target:  5'- -gCUGCAU--UAUUAAGGCgcucaCGCCGCGg -3'
miRNA:   3'- uaGGUGUGaaAUAAUUCCG-----GCGGCGU- -5'
13942 3' -51 NC_003521.1 + 139039 0.66 0.997835
Target:  5'- -gCCGCACgaggUGUaGAGGUCGuaGCAg -3'
miRNA:   3'- uaGGUGUGaa--AUAaUUCCGGCggCGU- -5'
13942 3' -51 NC_003521.1 + 142314 0.7 0.9564
Target:  5'- -gCCGCGCgcgUcgUcgcaacugggugcgcGAGGCCGCCGCc -3'
miRNA:   3'- uaGGUGUGaa-AuaA---------------UUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 142564 0.69 0.979094
Target:  5'- --aCGCGCgcggcu-GGGCCGCUGCAg -3'
miRNA:   3'- uagGUGUGaaauaauUCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 157592 0.66 0.997428
Target:  5'- cUCCGCGCgagugcGUgcggGAGGCCGUaCGCu -3'
miRNA:   3'- uAGGUGUGaaa---UAa---UUCCGGCG-GCGu -5'
13942 3' -51 NC_003521.1 + 160790 0.69 0.981304
Target:  5'- cUCCGCGuacgag-GAGGCUGCCGCc -3'
miRNA:   3'- uAGGUGUgaaauaaUUCCGGCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.