miRNA display CGI


Results 81 - 100 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 74871 0.67 0.943482
Target:  5'- uGGCGCGGCGGCGaggcgcgccggccGCggGAcgccGCGCc -3'
miRNA:   3'- -UCGCGCCGCCGC-------------CGuaCUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 164689 0.68 0.939362
Target:  5'- uGGCGCugcuagcaccaGCGGCGGUGUGGUgGUGCugGCg -3'
miRNA:   3'- -UCGCGc----------CGCCGCCGUACUAaUAUG--UG- -5'
13942 5' -54.6 NC_003521.1 + 53934 0.68 0.939362
Target:  5'- uGCcCGGCGGCGGCAgGAgcggaaGCa -3'
miRNA:   3'- uCGcGCCGCCGCCGUaCUaauaugUG- -5'
13942 5' -54.6 NC_003521.1 + 190309 0.68 0.939362
Target:  5'- cGCGCGGCGGUccuggucgaucGGCgacgGUGAUg--GCAg -3'
miRNA:   3'- uCGCGCCGCCG-----------CCG----UACUAauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 117524 0.68 0.939362
Target:  5'- cGaCGaCGGCGGUGGCggGAUggcggcgGCGCc -3'
miRNA:   3'- uC-GC-GCCGCCGCCGuaCUAaua----UGUG- -5'
13942 5' -54.6 NC_003521.1 + 42704 0.68 0.939362
Target:  5'- cGGCGUuguGGCgGGCGGCGacuccggcguuUGAUUAUaaugACGCc -3'
miRNA:   3'- -UCGCG---CCG-CCGCCGU-----------ACUAAUA----UGUG- -5'
13942 5' -54.6 NC_003521.1 + 117503 0.68 0.939362
Target:  5'- cGGCGgGGCGuaCGGCGg---UAUGCACu -3'
miRNA:   3'- -UCGCgCCGCc-GCCGUacuaAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 74590 0.68 0.939362
Target:  5'- cGGCGCGGCGucccGCGGCcgGc----GCGCc -3'
miRNA:   3'- -UCGCGCCGC----CGCCGuaCuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 120935 0.68 0.934562
Target:  5'- -cCGCGGCGGCGGCuccggcGAggg-GCAg -3'
miRNA:   3'- ucGCGCCGCCGCCGua----CUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 193306 0.68 0.934562
Target:  5'- cGGCGCGGgGGUGGUGg------GCACg -3'
miRNA:   3'- -UCGCGCCgCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 129999 0.68 0.934562
Target:  5'- uGCGcCGGCGGCGGC--------GCGCa -3'
miRNA:   3'- uCGC-GCCGCCGCCGuacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 54498 0.68 0.934562
Target:  5'- uGGC-CGGCGGCccGGCGUGGaccaggaucUGCACg -3'
miRNA:   3'- -UCGcGCCGCCG--CCGUACUaau------AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 17157 0.68 0.934562
Target:  5'- aGGCGCGGCcgagggggucgaGGCGGCcgcgGGgaacGCACg -3'
miRNA:   3'- -UCGCGCCG------------CCGCCGua--CUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 150637 0.68 0.929528
Target:  5'- uGCGCaGGCGGgGGCGUGcgcg-ACGa -3'
miRNA:   3'- uCGCG-CCGCCgCCGUACuaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 42870 0.68 0.929528
Target:  5'- cGGCGCcGcCGGCGGcCGUGGUaAUAgACu -3'
miRNA:   3'- -UCGCGcC-GCCGCC-GUACUAaUAUgUG- -5'
13942 5' -54.6 NC_003521.1 + 216121 0.68 0.926395
Target:  5'- gAGCGCGGCGcggaggccGCGGCAgagGAaggccaccuggGCGCa -3'
miRNA:   3'- -UCGCGCCGC--------CGCCGUa--CUaaua-------UGUG- -5'
13942 5' -54.6 NC_003521.1 + 117961 0.68 0.924797
Target:  5'- -uCGCGGCGGCGGCcagcaccaGCGCu -3'
miRNA:   3'- ucGCGCCGCCGCCGuacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 154292 0.68 0.92426
Target:  5'- gAGCGgGGCGGCacGGCGUccGGggccgACGCg -3'
miRNA:   3'- -UCGCgCCGCCG--CCGUA--CUaaua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 184127 0.68 0.92426
Target:  5'- uGCGCGGcCGaGaCGGCGuguUGAUcGUGCAUg -3'
miRNA:   3'- uCGCGCC-GC-C-GCCGU---ACUAaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 130246 0.68 0.92426
Target:  5'- cGGCGCaGCGGCaGC--GAcgGUGCACg -3'
miRNA:   3'- -UCGCGcCGCCGcCGuaCUaaUAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.