miRNA display CGI


Results 61 - 80 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 130497 0.67 0.952374
Target:  5'- gAGCGCGGCcGCGuCAUGAUggcccUGCGg -3'
miRNA:   3'- -UCGCGCCGcCGCcGUACUAau---AUGUg -5'
13942 5' -54.6 NC_003521.1 + 41637 0.67 0.952374
Target:  5'- gGGCGUGGCGcccGUGGuCAUGAUgaccugguucUACACc -3'
miRNA:   3'- -UCGCGCCGC---CGCC-GUACUAau--------AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 55835 0.67 0.952374
Target:  5'- cAGCGCGGCaGGCcGGCcu-----UGCACa -3'
miRNA:   3'- -UCGCGCCG-CCG-CCGuacuaauAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 142871 0.67 0.952374
Target:  5'- cGGCG-GGCaGCGGCGUGGgag-GCGg -3'
miRNA:   3'- -UCGCgCCGcCGCCGUACUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 114356 0.67 0.952374
Target:  5'- cGGCGCGGuCGGCGaCAUGGc--UGCGu -3'
miRNA:   3'- -UCGCGCC-GCCGCcGUACUaauAUGUg -5'
13942 5' -54.6 NC_003521.1 + 154300 0.67 0.952374
Target:  5'- gGGCGCcuGCcGCGGCAaGAgcAUGCACc -3'
miRNA:   3'- -UCGCGc-CGcCGCCGUaCUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 128338 0.67 0.952374
Target:  5'- cAGCGCGaGCccaugGGCGGCAUcGGcg--GCGCg -3'
miRNA:   3'- -UCGCGC-CG-----CCGCCGUA-CUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 71313 0.67 0.952374
Target:  5'- cAGCaccuGgGGCGGCGGCGUccg-AUACAg -3'
miRNA:   3'- -UCG----CgCCGCCGCCGUAcuaaUAUGUg -5'
13942 5' -54.6 NC_003521.1 + 55745 0.67 0.950758
Target:  5'- cAGCGCGcG-GGCGGCAgcgacagGCGCg -3'
miRNA:   3'- -UCGCGC-CgCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 110115 0.67 0.948265
Target:  5'- -cCGCGGUGGgGGCAgUGA----GCACg -3'
miRNA:   3'- ucGCGCCGCCgCCGU-ACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 92068 0.67 0.948265
Target:  5'- uAGCGaUGGCGGaccgggGGUcgGGggGUGCGCa -3'
miRNA:   3'- -UCGC-GCCGCCg-----CCGuaCUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 191736 0.67 0.948265
Target:  5'- uGCGCGuGUGGUGGCcgGGUgaggaaGCg -3'
miRNA:   3'- uCGCGC-CGCCGCCGuaCUAauaug-UG- -5'
13942 5' -54.6 NC_003521.1 + 203632 0.67 0.948265
Target:  5'- -cCGCGGCGGUuucugcggaGGCGUGuguggACGCg -3'
miRNA:   3'- ucGCGCCGCCG---------CCGUACuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 76977 0.67 0.948265
Target:  5'- uGCGCGugauGCuGGCGGCgAUGGgcagGCACg -3'
miRNA:   3'- uCGCGC----CG-CCGCCG-UACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 186852 0.67 0.948265
Target:  5'- cGGCcCaGCGGCGGCGUGca---GCACg -3'
miRNA:   3'- -UCGcGcCGCCGCCGUACuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 3910 0.67 0.943929
Target:  5'- aGGCaGaCGGCGGCGGcCGUGGc---ACGCu -3'
miRNA:   3'- -UCG-C-GCCGCCGCC-GUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 43442 0.67 0.943929
Target:  5'- gAG-GCGGCGGCGGCccugGAacucuCACa -3'
miRNA:   3'- -UCgCGCCGCCGCCGua--CUaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 54464 0.67 0.943929
Target:  5'- -aCGCGGCGGCGGU--GGUggcgGCAa -3'
miRNA:   3'- ucGCGCCGCCGCCGuaCUAaua-UGUg -5'
13942 5' -54.6 NC_003521.1 + 190590 0.67 0.943929
Target:  5'- cAGCGUGuCGGCGGCGgugGAgaugGUAC-Ca -3'
miRNA:   3'- -UCGCGCcGCCGCCGUa--CUaa--UAUGuG- -5'
13942 5' -54.6 NC_003521.1 + 34537 0.67 0.943929
Target:  5'- cGCGCGaGCGGCgacagaguucGGCcuuGUGGUcgggGUGCACc -3'
miRNA:   3'- uCGCGC-CGCCG----------CCG---UACUAa---UAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.