miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 221632 0.66 0.966597
Target:  5'- aGGCGCGGCGGgacCAUGucgcUGCGCg -3'
miRNA:   3'- -UCGCGCCGCCgccGUACuaauAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 142601 0.66 0.966597
Target:  5'- cGGcCGUGGCGGCGGCcuc-----GCGCa -3'
miRNA:   3'- -UC-GCGCCGCCGCCGuacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 62034 0.67 0.964683
Target:  5'- gAGC-CGGCGGCGGUcccgGUGAcgGggaacggcugaaaacUGCGCg -3'
miRNA:   3'- -UCGcGCCGCCGCCG----UACUaaU---------------AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 86210 0.67 0.963364
Target:  5'- aGGCGaagGGCGGCGGCAcgccggcggccuUGAgcuccUugACg -3'
miRNA:   3'- -UCGCg--CCGCCGCCGU------------ACUaau--AugUG- -5'
13942 5' -54.6 NC_003521.1 + 148024 0.67 0.963364
Target:  5'- -cCGUGGUGGUGGCcAUGGgccUGUGCuACg -3'
miRNA:   3'- ucGCGCCGCCGCCG-UACUa--AUAUG-UG- -5'
13942 5' -54.6 NC_003521.1 + 44087 0.67 0.963364
Target:  5'- cGGC-CGGCGGCGGC-UGAcccgGCuGCu -3'
miRNA:   3'- -UCGcGCCGCCGCCGuACUaauaUG-UG- -5'
13942 5' -54.6 NC_003521.1 + 47407 0.67 0.963364
Target:  5'- aAGCGCGGCGGCGucuauuGCuacGAUgaccucCACg -3'
miRNA:   3'- -UCGCGCCGCCGC------CGua-CUAauau--GUG- -5'
13942 5' -54.6 NC_003521.1 + 226027 0.67 0.962692
Target:  5'- gAGCGCGaGCGGCG-CGUGcugcaacaGCACu -3'
miRNA:   3'- -UCGCGC-CGCCGCcGUACuaaua---UGUG- -5'
13942 5' -54.6 NC_003521.1 + 218717 0.67 0.959919
Target:  5'- --gGCGGCGGCGGCGggcGAgaagcgGCGu -3'
miRNA:   3'- ucgCGCCGCCGCCGUa--CUaaua--UGUg -5'
13942 5' -54.6 NC_003521.1 + 118574 0.67 0.959919
Target:  5'- -aCGCGGCGGCgGGCAggccggcggcggUGGUaGUGCuGCu -3'
miRNA:   3'- ucGCGCCGCCG-CCGU------------ACUAaUAUG-UG- -5'
13942 5' -54.6 NC_003521.1 + 132797 0.67 0.959919
Target:  5'- gAGgGCGGUGGUGGCgGUGAcg--ACGa -3'
miRNA:   3'- -UCgCGCCGCCGCCG-UACUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 185174 0.67 0.959919
Target:  5'- -cCGaCGGCGGCGGCAacGGggGUGCcaGCg -3'
miRNA:   3'- ucGC-GCCGCCGCCGUa-CUaaUAUG--UG- -5'
13942 5' -54.6 NC_003521.1 + 69424 0.67 0.956257
Target:  5'- gGGCGuCGGgagcguCGGCGGCAUGAcga-GCAa -3'
miRNA:   3'- -UCGC-GCC------GCCGCCGUACUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 117397 0.67 0.956257
Target:  5'- cGGCGUGGCGGUGGaagagGAggcgGCGg -3'
miRNA:   3'- -UCGCGCCGCCGCCgua--CUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 76879 0.67 0.956257
Target:  5'- cGGCGgGGCGGCGGUGg---UAgcgGCGg -3'
miRNA:   3'- -UCGCgCCGCCGCCGUacuaAUa--UGUg -5'
13942 5' -54.6 NC_003521.1 + 162788 0.67 0.956257
Target:  5'- uGCGUGGaCGGCgaaGGCAaGGUcAUGCAUc -3'
miRNA:   3'- uCGCGCC-GCCG---CCGUaCUAaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 176451 0.67 0.956257
Target:  5'- cAGCGUGGaCGGUGGCuccaagcgaaGUGAcgGUuCACu -3'
miRNA:   3'- -UCGCGCC-GCCGCCG----------UACUaaUAuGUG- -5'
13942 5' -54.6 NC_003521.1 + 224078 0.67 0.955879
Target:  5'- -cCGCGGUGGCGGCG-------GCGCa -3'
miRNA:   3'- ucGCGCCGCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 158241 0.67 0.954731
Target:  5'- cGCG-GGCGGCGGCGUcgcuaccaGCGCc -3'
miRNA:   3'- uCGCgCCGCCGCCGUAcuaaua--UGUG- -5'
13942 5' -54.6 NC_003521.1 + 114356 0.67 0.952374
Target:  5'- cGGCGCGGuCGGCGaCAUGGc--UGCGu -3'
miRNA:   3'- -UCGCGCC-GCCGCcGUACUaauAUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.