miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 92018 0.76 0.545726
Target:  5'- aGGCGCGGCGGCGGCGgcg--GUGgGu -3'
miRNA:   3'- -UCGCGCCGCCGCCGUacuaaUAUgUg -5'
13942 5' -54.6 NC_003521.1 + 111951 0.78 0.441629
Target:  5'- uGGCGCGGCGGCaGgAUGAgucuguUGCGCa -3'
miRNA:   3'- -UCGCGCCGCCGcCgUACUaau---AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 168544 0.79 0.406617
Target:  5'- cAGCGCGGCGGCGGCGcUGGcgGgcUGCGg -3'
miRNA:   3'- -UCGCGCCGCCGCCGU-ACUaaU--AUGUg -5'
13942 5' -54.6 NC_003521.1 + 141361 0.79 0.389777
Target:  5'- gGGUGCGGCGGCGGUcgGug---ACGCg -3'
miRNA:   3'- -UCGCGCCGCCGCCGuaCuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 207443 0.8 0.347416
Target:  5'- gAGCgGCGGCuGGCGGCGugugugagugacggUGAUUAUAUACa -3'
miRNA:   3'- -UCG-CGCCG-CCGCCGU--------------ACUAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 218035 0.72 0.78318
Target:  5'- uGgGCGGCGGCGGCGUccgcagguaGAUgagGUcCACc -3'
miRNA:   3'- uCgCGCCGCCGCCGUA---------CUAa--UAuGUG- -5'
13942 5' -54.6 NC_003521.1 + 102071 0.71 0.801169
Target:  5'- cGGUGuUGGCGGggaagGGCGUGAUgAUGCGCa -3'
miRNA:   3'- -UCGC-GCCGCCg----CCGUACUAaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 163761 0.7 0.866503
Target:  5'- cGGCGCucacGGCGGCGGCAacaacGGUagcgGCGCc -3'
miRNA:   3'- -UCGCG----CCGCCGCCGUa----CUAaua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 19993 0.7 0.866503
Target:  5'- -uCGUGGCuGGCGGCGUGGauucACGCa -3'
miRNA:   3'- ucGCGCCG-CCGCCGUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 36076 0.7 0.862022
Target:  5'- cAGgGCGGCGGCGGCGccuccau-CACc -3'
miRNA:   3'- -UCgCGCCGCCGCCGUacuaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 36776 0.7 0.858993
Target:  5'- cGCGUGGCcuGGCgGGCGUGGagg-ACGCg -3'
miRNA:   3'- uCGCGCCG--CCG-CCGUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 240645 0.7 0.858231
Target:  5'- gGGCGUGcagggaggccgaaGCGGCGGCcgGAgccGUGCAg -3'
miRNA:   3'- -UCGCGC-------------CGCCGCCGuaCUaa-UAUGUg -5'
13942 5' -54.6 NC_003521.1 + 96 0.7 0.858231
Target:  5'- gGGCGUGcagggaggccgaaGCGGCGGCcgGAgccGUGCAg -3'
miRNA:   3'- -UCGCGC-------------CGCCGCCGuaCUaa-UAUGUg -5'
13942 5' -54.6 NC_003521.1 + 240080 0.7 0.843377
Target:  5'- cGGCGUGG-GGCuugcacguGGUggGGUUGUGCACg -3'
miRNA:   3'- -UCGCGCCgCCG--------CCGuaCUAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 102341 0.7 0.843377
Target:  5'- gGGCGCcgacgccggGGUGGCGGCAggcgcucuUGAagaaGUACACg -3'
miRNA:   3'- -UCGCG---------CCGCCGCCGU--------ACUaa--UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 166862 0.71 0.835282
Target:  5'- uGGCGCGGCGG-GcGCA-GGUcGUACAUc -3'
miRNA:   3'- -UCGCGCCGCCgC-CGUaCUAaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 217406 0.71 0.827007
Target:  5'- aGGC-UGaGCGGCGGCAUGAagccgGUGCAg -3'
miRNA:   3'- -UCGcGC-CGCCGCCGUACUaa---UAUGUg -5'
13942 5' -54.6 NC_003521.1 + 101724 0.71 0.823648
Target:  5'- uGCGCGGCGGgGGCGaGAUggggaaggccgGCAg -3'
miRNA:   3'- uCGCGCCGCCgCCGUaCUAaua--------UGUg -5'
13942 5' -54.6 NC_003521.1 + 78138 0.71 0.818558
Target:  5'- gGGCGCGuuaGCGGCGGCGgccgcGAacgagGCACg -3'
miRNA:   3'- -UCGCGC---CGCCGCCGUa----CUaaua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 75550 0.71 0.813408
Target:  5'- cGGCGcCGGCGGCGGCuacgcca-GCGCc -3'
miRNA:   3'- -UCGC-GCCGCCGCCGuacuaauaUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.