miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 58826 0.7 0.873807
Target:  5'- cAGCGC-GUGGCGGCcGUGAcgUUAcugGCGCg -3'
miRNA:   3'- -UCGCGcCGCCGCCG-UACU--AAUa--UGUG- -5'
13942 5' -54.6 NC_003521.1 + 62034 0.67 0.964683
Target:  5'- gAGC-CGGCGGCGGUcccgGUGAcgGggaacggcugaaaacUGCGCg -3'
miRNA:   3'- -UCGcGCCGCCGCCG----UACUaaU---------------AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 65717 0.66 0.977522
Target:  5'- cGGCGCcGCGGCGGCccUGGccg-GCAa -3'
miRNA:   3'- -UCGCGcCGCCGCCGu-ACUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 66036 0.7 0.873807
Target:  5'- uGUcCGGCGGCGGUGUGAUgcgGCcCg -3'
miRNA:   3'- uCGcGCCGCCGCCGUACUAauaUGuG- -5'
13942 5' -54.6 NC_003521.1 + 66365 0.69 0.904599
Target:  5'- cGCGUGGcCGGCGGCGagcagcgACACc -3'
miRNA:   3'- uCGCGCC-GCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 68759 0.66 0.966597
Target:  5'- cGGuCGCGGCggacgggugaggGGCGGCG-GGUUcugACGCa -3'
miRNA:   3'- -UC-GCGCCG------------CCGCCGUaCUAAua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 69424 0.67 0.956257
Target:  5'- gGGCGuCGGgagcguCGGCGGCAUGAcga-GCAa -3'
miRNA:   3'- -UCGC-GCC------GCCGCCGUACUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 71105 0.66 0.977522
Target:  5'- gAG-GCGGCGGCGGgggacgcuuucCAUGAggccUUGcUGCGCc -3'
miRNA:   3'- -UCgCGCCGCCGCC-----------GUACU----AAU-AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 71313 0.67 0.952374
Target:  5'- cAGCaccuGgGGCGGCGGCGUccg-AUACAg -3'
miRNA:   3'- -UCG----CgCCGCCGCCGUAcuaaUAUGUg -5'
13942 5' -54.6 NC_003521.1 + 71638 0.76 0.555631
Target:  5'- cGGCGuCGGCGGCGGCG-GGUUcgucgccagGCGCg -3'
miRNA:   3'- -UCGC-GCCGCCGCCGUaCUAAua-------UGUG- -5'
13942 5' -54.6 NC_003521.1 + 71760 0.75 0.62606
Target:  5'- cAGCGUcGCGGcCGGCGUGGUUucggguUGCGCu -3'
miRNA:   3'- -UCGCGcCGCC-GCCGUACUAAu-----AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 73145 0.69 0.879496
Target:  5'- gGGCaGCGGCGGCGGCGccgccucggccUGcgaccuggACGCg -3'
miRNA:   3'- -UCG-CGCCGCCGCCGU-----------ACuaaua---UGUG- -5'
13942 5' -54.6 NC_003521.1 + 74590 0.68 0.939362
Target:  5'- cGGCGCGGCGucccGCGGCcgGc----GCGCc -3'
miRNA:   3'- -UCGCGCCGC----CGCCGuaCuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 74871 0.67 0.943482
Target:  5'- uGGCGCGGCGGCGaggcgcgccggccGCggGAcgccGCGCc -3'
miRNA:   3'- -UCGCGCCGCCGC-------------CGuaCUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 75550 0.71 0.813408
Target:  5'- cGGCGcCGGCGGCGGCuacgcca-GCGCc -3'
miRNA:   3'- -UCGC-GCCGCCGCCGuacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 76879 0.67 0.956257
Target:  5'- cGGCGgGGCGGCGGUGg---UAgcgGCGg -3'
miRNA:   3'- -UCGCgCCGCCGCCGUacuaAUa--UGUg -5'
13942 5' -54.6 NC_003521.1 + 76977 0.67 0.948265
Target:  5'- uGCGCGugauGCuGGCGGCgAUGGgcagGCACg -3'
miRNA:   3'- uCGCGC----CG-CCGCCG-UACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 77273 0.66 0.977522
Target:  5'- cGGCGUGGUcaaCGGCAUGAUgccGUGCc- -3'
miRNA:   3'- -UCGCGCCGcc-GCCGUACUAa--UAUGug -5'
13942 5' -54.6 NC_003521.1 + 77728 0.77 0.497168
Target:  5'- uAGCaGCGGCGGCGGCAgUGucacggGCACc -3'
miRNA:   3'- -UCG-CGCCGCCGCCGU-ACuaaua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 78138 0.71 0.818558
Target:  5'- gGGCGCGuuaGCGGCGGCGgccgcGAacgagGCACg -3'
miRNA:   3'- -UCGCGC---CGCCGCCGUa----CUaaua-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.