miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 42704 0.68 0.939362
Target:  5'- cGGCGUuguGGCgGGCGGCGacuccggcguuUGAUUAUaaugACGCc -3'
miRNA:   3'- -UCGCG---CCG-CCGCCGU-----------ACUAAUA----UGUG- -5'
13942 5' -54.6 NC_003521.1 + 42870 0.68 0.929528
Target:  5'- cGGCGCcGcCGGCGGcCGUGGUaAUAgACu -3'
miRNA:   3'- -UCGCGcC-GCCGCC-GUACUAaUAUgUG- -5'
13942 5' -54.6 NC_003521.1 + 43118 0.75 0.599744
Target:  5'- aAGCGCuGCGGCgagcgcucggcgcugGGCGUGGagGUGCACg -3'
miRNA:   3'- -UCGCGcCGCCG---------------CCGUACUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 43442 0.67 0.943929
Target:  5'- gAG-GCGGCGGCGGCccugGAacucuCACa -3'
miRNA:   3'- -UCgCGCCGCCGCCGua--CUaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 44087 0.67 0.963364
Target:  5'- cGGC-CGGCGGCGGC-UGAcccgGCuGCu -3'
miRNA:   3'- -UCGcGCCGCCGCCGuACUaauaUG-UG- -5'
13942 5' -54.6 NC_003521.1 + 44687 0.73 0.736034
Target:  5'- aAGgGCGGCGGCaGGUAgagcaGGUUGUAgGCc -3'
miRNA:   3'- -UCgCGCCGCCG-CCGUa----CUAAUAUgUG- -5'
13942 5' -54.6 NC_003521.1 + 45894 0.71 0.801169
Target:  5'- gAGCcgGCGGCGGUGGCcgucUGcgUcgGCGCu -3'
miRNA:   3'- -UCG--CGCCGCCGCCGu---ACuaAuaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 47407 0.67 0.963364
Target:  5'- aAGCGCGGCGGCGucuauuGCuacGAUgaccucCACg -3'
miRNA:   3'- -UCGCGCCGCCGC------CGua-CUAauau--GUG- -5'
13942 5' -54.6 NC_003521.1 + 53427 0.69 0.913021
Target:  5'- cGGCGagGGCGGCcGCGUGuacuguUACGCg -3'
miRNA:   3'- -UCGCg-CCGCCGcCGUACuaau--AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 53934 0.68 0.939362
Target:  5'- uGCcCGGCGGCGGCAgGAgcggaaGCa -3'
miRNA:   3'- uCGcGCCGCCGCCGUaCUaauaugUG- -5'
13942 5' -54.6 NC_003521.1 + 54296 0.71 0.809943
Target:  5'- uGGCgGCGGCGGgGGCAaGAa---GCACg -3'
miRNA:   3'- -UCG-CGCCGCCgCCGUaCUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 54432 0.76 0.565588
Target:  5'- cGCGCGGCGGUGGCG-GAggcgGCGg -3'
miRNA:   3'- uCGCGCCGCCGCCGUaCUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 54464 0.67 0.943929
Target:  5'- -aCGCGGCGGCGGU--GGUggcgGCAa -3'
miRNA:   3'- ucGCGCCGCCGCCGuaCUAaua-UGUg -5'
13942 5' -54.6 NC_003521.1 + 54498 0.68 0.934562
Target:  5'- uGGC-CGGCGGCccGGCGUGGaccaggaucUGCACg -3'
miRNA:   3'- -UCGcGCCGCCG--CCGUACUaau------AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 55745 0.67 0.950758
Target:  5'- cAGCGCGcG-GGCGGCAgcgacagGCGCg -3'
miRNA:   3'- -UCGCGC-CgCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 55835 0.67 0.952374
Target:  5'- cAGCGCGGCaGGCcGGCcu-----UGCACa -3'
miRNA:   3'- -UCGCGCCG-CCG-CCGuacuaauAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 57160 0.68 0.92426
Target:  5'- cGCGCGGCaGGUcgucGGCGUGccgcaGCACg -3'
miRNA:   3'- uCGCGCCG-CCG----CCGUACuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 57272 0.66 0.975079
Target:  5'- cGCGUGGCGGCGucCGUGAc----CGCg -3'
miRNA:   3'- uCGCGCCGCCGCc-GUACUaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 57587 0.66 0.977522
Target:  5'- gGGCGcCGGCGGCGaaccccgagucaGCGUGccgucGCGCu -3'
miRNA:   3'- -UCGC-GCCGCCGC------------CGUACuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 58656 0.72 0.764659
Target:  5'- -aCGCGGCcGCGGCA-GAUcccccUGUGCACg -3'
miRNA:   3'- ucGCGCCGcCGCCGUaCUA-----AUAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.