Results 21 - 40 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13942 | 5' | -54.6 | NC_003521.1 | + | 227631 | 0.66 | 0.972175 |
Target: 5'- aAGCGCaGCGGCGGUA-------GCGCc -3' miRNA: 3'- -UCGCGcCGCCGCCGUacuaauaUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 215828 | 0.66 | 0.972449 |
Target: 5'- cGGCGCGGUcccuggccugGGUGuaccaguuucGCGUGAccgUGUACACc -3' miRNA: 3'- -UCGCGCCG----------CCGC----------CGUACUa--AUAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 65717 | 0.66 | 0.977522 |
Target: 5'- cGGCGCcGCGGCGGCccUGGccg-GCAa -3' miRNA: 3'- -UCGCGcCGCCGCCGu-ACUaauaUGUg -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 87472 | 0.66 | 0.977522 |
Target: 5'- cAGCGCuguaGCGGCGGCcgaaGGUgcccaGCACa -3' miRNA: 3'- -UCGCGc---CGCCGCCGua--CUAaua--UGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 150663 | 0.66 | 0.975079 |
Target: 5'- aGGCGgcucucCGGCGGCGGCGccgcugcugcUGggUGcugcUGCGCc -3' miRNA: 3'- -UCGC------GCCGCCGCCGU----------ACuaAU----AUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 85914 | 0.66 | 0.977522 |
Target: 5'- cAGCugGCGGCcGCGGCugccggggGGgagGUGCACg -3' miRNA: 3'- -UCG--CGCCGcCGCCGua------CUaa-UAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 57272 | 0.66 | 0.975079 |
Target: 5'- cGCGUGGCGGCGucCGUGAc----CGCg -3' miRNA: 3'- uCGCGCCGCCGCc-GUACUaauauGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 218432 | 0.66 | 0.977522 |
Target: 5'- cAGCGaCaGCGGCGGCAccacgGAgg--ACAUg -3' miRNA: 3'- -UCGC-GcCGCCGCCGUa----CUaauaUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 218629 | 0.66 | 0.975079 |
Target: 5'- cGCGCGGCGGUaagcggccacGGCcgGcg---GCGCc -3' miRNA: 3'- uCGCGCCGCCG----------CCGuaCuaauaUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 226152 | 0.66 | 0.977522 |
Target: 5'- --aGCGGCGGCacucGGCGUcGUUcaGCGCg -3' miRNA: 3'- ucgCGCCGCCG----CCGUAcUAAuaUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 99190 | 0.66 | 0.975079 |
Target: 5'- gGGgGCugaaGGUGGCGGCG-GAggAUACGg -3' miRNA: 3'- -UCgCG----CCGCCGCCGUaCUaaUAUGUg -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 222810 | 0.66 | 0.978447 |
Target: 5'- uAGCGCGGCucggugguggaaaacGGCGucuGCggGUGGcgAUACACg -3' miRNA: 3'- -UCGCGCCG---------------CCGC---CG--UACUaaUAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 194698 | 0.66 | 0.972449 |
Target: 5'- gGGCGCGG-GGUG-CGUGGg---GCGCg -3' miRNA: 3'- -UCGCGCCgCCGCcGUACUaauaUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 149273 | 0.66 | 0.96933 |
Target: 5'- cGUGgGGuCGGUcuggaucuggacgGGCGUGAagGUGCGCg -3' miRNA: 3'- uCGCgCC-GCCG-------------CCGUACUaaUAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 17661 | 0.66 | 0.975079 |
Target: 5'- gAGCGauGCGGCcuccagacugcgGGCGUGGUUcu-CGCg -3' miRNA: 3'- -UCGCgcCGCCG------------CCGUACUAAuauGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 226367 | 0.66 | 0.975332 |
Target: 5'- cGCGgGaGCGGCGGCugacgccgccgcagGGccgUGUGCACc -3' miRNA: 3'- uCGCgC-CGCCGCCGua------------CUa--AUAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 145577 | 0.66 | 0.977522 |
Target: 5'- cGUGCuGCGGCGGCAcGAcgcgGCGg -3' miRNA: 3'- uCGCGcCGCCGCCGUaCUaauaUGUg -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 163198 | 0.66 | 0.977522 |
Target: 5'- cGGUgGUGGCGGCGGCAgcg----GCAg -3' miRNA: 3'- -UCG-CGCCGCCGCCGUacuaauaUGUg -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 148772 | 0.66 | 0.972449 |
Target: 5'- aGGCGCaGCcGCGGCAUGGgccucCAUa -3' miRNA: 3'- -UCGCGcCGcCGCCGUACUaauauGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 221632 | 0.66 | 0.966597 |
Target: 5'- aGGCGCGGCGGgacCAUGucgcUGCGCg -3' miRNA: 3'- -UCGCGCCGCCgccGUACuaauAUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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