miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 105938 0.66 0.971342
Target:  5'- cGUGUGGcCGGCGcGgAUGAUgaccgugugucggGUGCGCa -3'
miRNA:   3'- uCGCGCC-GCCGC-CgUACUAa------------UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 40914 0.66 0.975079
Target:  5'- uAGCgagGCGGgGGCGGCccGGggGaGCGCc -3'
miRNA:   3'- -UCG---CGCCgCCGCCGuaCUaaUaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 226027 0.67 0.962692
Target:  5'- gAGCGCGaGCGGCG-CGUGcugcaacaGCACu -3'
miRNA:   3'- -UCGCGC-CGCCGCcGUACuaaua---UGUG- -5'
13942 5' -54.6 NC_003521.1 + 148024 0.67 0.963364
Target:  5'- -cCGUGGUGGUGGCcAUGGgccUGUGCuACg -3'
miRNA:   3'- ucGCGCCGCCGCCG-UACUa--AUAUG-UG- -5'
13942 5' -54.6 NC_003521.1 + 118574 0.67 0.959919
Target:  5'- -aCGCGGCGGCgGGCAggccggcggcggUGGUaGUGCuGCu -3'
miRNA:   3'- ucGCGCCGCCG-CCGU------------ACUAaUAUG-UG- -5'
13942 5' -54.6 NC_003521.1 + 47407 0.67 0.963364
Target:  5'- aAGCGCGGCGGCGucuauuGCuacGAUgaccucCACg -3'
miRNA:   3'- -UCGCGCCGCCGC------CGua-CUAauau--GUG- -5'
13942 5' -54.6 NC_003521.1 + 44087 0.67 0.963364
Target:  5'- cGGC-CGGCGGCGGC-UGAcccgGCuGCu -3'
miRNA:   3'- -UCGcGCCGCCGCCGuACUaauaUG-UG- -5'
13942 5' -54.6 NC_003521.1 + 43442 0.67 0.943929
Target:  5'- gAG-GCGGCGGCGGCccugGAacucuCACa -3'
miRNA:   3'- -UCgCGCCGCCGCCGua--CUaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 34537 0.67 0.943929
Target:  5'- cGCGCGaGCGGCgacagaguucGGCcuuGUGGUcgggGUGCACc -3'
miRNA:   3'- uCGCGC-CGCCG----------CCG---UACUAa---UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 132797 0.67 0.959919
Target:  5'- gAGgGCGGUGGUGGCgGUGAcg--ACGa -3'
miRNA:   3'- -UCgCGCCGCCGCCG-UACUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 185174 0.67 0.959919
Target:  5'- -cCGaCGGCGGCGGCAacGGggGUGCcaGCg -3'
miRNA:   3'- ucGC-GCCGCCGCCGUa-CUaaUAUG--UG- -5'
13942 5' -54.6 NC_003521.1 + 69424 0.67 0.956257
Target:  5'- gGGCGuCGGgagcguCGGCGGCAUGAcga-GCAa -3'
miRNA:   3'- -UCGC-GCC------GCCGCCGUACUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 86210 0.67 0.963364
Target:  5'- aGGCGaagGGCGGCGGCAcgccggcggccuUGAgcuccUugACg -3'
miRNA:   3'- -UCGCg--CCGCCGCCGU------------ACUaau--AugUG- -5'
13942 5' -54.6 NC_003521.1 + 218717 0.67 0.959919
Target:  5'- --gGCGGCGGCGGCGggcGAgaagcgGCGu -3'
miRNA:   3'- ucgCGCCGCCGCCGUa--CUaaua--UGUg -5'
13942 5' -54.6 NC_003521.1 + 55835 0.67 0.952374
Target:  5'- cAGCGCGGCaGGCcGGCcu-----UGCACa -3'
miRNA:   3'- -UCGCGCCG-CCG-CCGuacuaauAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 41637 0.67 0.952374
Target:  5'- gGGCGUGGCGcccGUGGuCAUGAUgaccugguucUACACc -3'
miRNA:   3'- -UCGCGCCGC---CGCC-GUACUAau--------AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 55745 0.67 0.950758
Target:  5'- cAGCGCGcG-GGCGGCAgcgacagGCGCg -3'
miRNA:   3'- -UCGCGC-CgCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 224078 0.67 0.955879
Target:  5'- -cCGCGGUGGCGGCG-------GCGCa -3'
miRNA:   3'- ucGCGCCGCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 117397 0.67 0.956257
Target:  5'- cGGCGUGGCGGUGGaagagGAggcgGCGg -3'
miRNA:   3'- -UCGCGCCGCCGCCgua--CUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 76879 0.67 0.956257
Target:  5'- cGGCGgGGCGGCGGUGg---UAgcgGCGg -3'
miRNA:   3'- -UCGCgCCGCCGCCGUacuaAUa--UGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.