miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 187733 0.74 0.636196
Target:  5'- cGGCGCGGCGGCGGag-GGgccgACAg -3'
miRNA:   3'- -UCGCGCCGCCGCCguaCUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 171385 0.74 0.64633
Target:  5'- uGGUGuCGGUGGCGGCGgcccUGAg-GUACGCg -3'
miRNA:   3'- -UCGC-GCCGCCGCCGU----ACUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 136925 0.73 0.686672
Target:  5'- -cUGCGGCGGCGGCGcgGGUc--GCACg -3'
miRNA:   3'- ucGCGCCGCCGCCGUa-CUAauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 131046 0.73 0.687674
Target:  5'- uGgGCGGCGGCGGCGggccucuggACGCg -3'
miRNA:   3'- uCgCGCCGCCGCCGUacuaaua--UGUG- -5'
13942 5' -54.6 NC_003521.1 + 117914 0.73 0.706611
Target:  5'- aGGUgGCGGCGGCGGCGgggGAccGUAgGCc -3'
miRNA:   3'- -UCG-CGCCGCCGCCGUa--CUaaUAUgUG- -5'
13942 5' -54.6 NC_003521.1 + 164884 0.73 0.706611
Target:  5'- cGGuCGCGGUGGUGGUAUGAgug-GCGg -3'
miRNA:   3'- -UC-GCGCCGCCGCCGUACUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 142454 0.73 0.716493
Target:  5'- gAGCgGCGGCGGCGGUAgcgGcgUcgACGa -3'
miRNA:   3'- -UCG-CGCCGCCGCCGUa--CuaAuaUGUg -5'
13942 5' -54.6 NC_003521.1 + 44687 0.73 0.736034
Target:  5'- aAGgGCGGCGGCaGGUAgagcaGGUUGUAgGCc -3'
miRNA:   3'- -UCgCGCCGCCG-CCGUa----CUAAUAUgUG- -5'
13942 5' -54.6 NC_003521.1 + 124726 0.73 0.736034
Target:  5'- gAGCGCGGCGGCGaacGCGUGccgc--CGCg -3'
miRNA:   3'- -UCGCGCCGCCGC---CGUACuaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 31089 0.72 0.755221
Target:  5'- cAGCGacgaCGGCGGCGGCcg----GUACACg -3'
miRNA:   3'- -UCGC----GCCGCCGCCGuacuaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 117034 0.72 0.76278
Target:  5'- uGcCGCGGCGGCGGCccacgc-UGCACa -3'
miRNA:   3'- uC-GCGCCGCCGCCGuacuaauAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 58656 0.72 0.764659
Target:  5'- -aCGCGGCcGCGGCA-GAUcccccUGUGCACg -3'
miRNA:   3'- ucGCGCCGcCGCCGUaCUA-----AUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 115436 0.72 0.773982
Target:  5'- cGGCGCGGgGGUGaCGgUGGUUGUGCGg -3'
miRNA:   3'- -UCGCGCCgCCGCcGU-ACUAAUAUGUg -5'
13942 5' -54.6 NC_003521.1 + 27977 0.72 0.773982
Target:  5'- cGGCGCucacggccacGGCGGCaGCGUGAgcg-GCACc -3'
miRNA:   3'- -UCGCG----------CCGCCGcCGUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 105848 0.72 0.773982
Target:  5'- uGCGcCGGCGGCGGCGacg----ACACg -3'
miRNA:   3'- uCGC-GCCGCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 154197 0.72 0.78318
Target:  5'- cGGCGCGGCgGGUGGCcgaggaGUGGaagcUGCACg -3'
miRNA:   3'- -UCGCGCCG-CCGCCG------UACUaau-AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 218035 0.72 0.78318
Target:  5'- uGgGCGGCGGCGGCGUccgcagguaGAUgagGUcCACc -3'
miRNA:   3'- uCgCGCCGCCGCCGUA---------CUAa--UAuGUG- -5'
13942 5' -54.6 NC_003521.1 + 85830 0.71 0.791345
Target:  5'- gGGgGCGGCGGCGGCG-------GCGCc -3'
miRNA:   3'- -UCgCGCCGCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 164734 0.71 0.801169
Target:  5'- cGGCuGCGGCGGCGGCAgcg----GCGa -3'
miRNA:   3'- -UCG-CGCCGCCGCCGUacuaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 102071 0.71 0.801169
Target:  5'- cGGUGuUGGCGGggaagGGCGUGAUgAUGCGCa -3'
miRNA:   3'- -UCGC-GCCGCCg----CCGUACUAaUAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.