miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 218432 0.66 0.977522
Target:  5'- cAGCGaCaGCGGCGGCAccacgGAgg--ACAUg -3'
miRNA:   3'- -UCGC-GcCGCCGCCGUa----CUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 218084 0.68 0.918757
Target:  5'- cAGCGaGGCGGCGGCGccGGUg--ACGa -3'
miRNA:   3'- -UCGCgCCGCCGCCGUa-CUAauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 218035 0.72 0.78318
Target:  5'- uGgGCGGCGGCGGCGUccgcagguaGAUgagGUcCACc -3'
miRNA:   3'- uCgCGCCGCCGCCGUA---------CUAa--UAuGUG- -5'
13942 5' -54.6 NC_003521.1 + 217406 0.71 0.827007
Target:  5'- aGGC-UGaGCGGCGGCAUGAagccgGUGCAg -3'
miRNA:   3'- -UCGcGC-CGCCGCCGUACUaa---UAUGUg -5'
13942 5' -54.6 NC_003521.1 + 216121 0.68 0.926395
Target:  5'- gAGCGCGGCGcggaggccGCGGCAgagGAaggccaccuggGCGCa -3'
miRNA:   3'- -UCGCGCCGC--------CGCCGUa--CUaaua-------UGUG- -5'
13942 5' -54.6 NC_003521.1 + 215828 0.66 0.972449
Target:  5'- cGGCGCGGUcccuggccugGGUGuaccaguuucGCGUGAccgUGUACACc -3'
miRNA:   3'- -UCGCGCCG----------CCGC----------CGUACUa--AUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 214822 0.66 0.969623
Target:  5'- gGGCGCGGCGaCGGCGguuccAUGCu- -3'
miRNA:   3'- -UCGCGCCGCcGCCGUacuaaUAUGug -5'
13942 5' -54.6 NC_003521.1 + 209555 0.69 0.887771
Target:  5'- cGGCGgGGUGGCGGCGacGGUg--GCGg -3'
miRNA:   3'- -UCGCgCCGCCGCCGUa-CUAauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 207443 0.8 0.347416
Target:  5'- gAGCgGCGGCuGGCGGCGugugugagugacggUGAUUAUAUACa -3'
miRNA:   3'- -UCG-CGCCG-CCGCCGU--------------ACUAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 203632 0.67 0.948265
Target:  5'- -cCGCGGCGGUuucugcggaGGCGUGuguggACGCg -3'
miRNA:   3'- ucGCGCCGCCG---------CCGUACuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 201235 0.7 0.843377
Target:  5'- cGGCGUGG-GGCuugcacguGGUggGGUUGUGCACg -3'
miRNA:   3'- -UCGCGCCgCCG--------CCGuaCUAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 200670 0.7 0.858231
Target:  5'- gGGCGUGcagggaggccgaaGCGGCGGCcgGAgccGUGCAg -3'
miRNA:   3'- -UCGCGC-------------CGCCGCCGuaCUaa-UAUGUg -5'
13942 5' -54.6 NC_003521.1 + 198427 0.75 0.62606
Target:  5'- uGGUGaCGGUGGCGGCcAUG-UUGUAUGCg -3'
miRNA:   3'- -UCGC-GCCGCCGCCG-UACuAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 196729 0.68 0.922087
Target:  5'- cGGCGaCGGUGGUGGCGgcggcgccUGCACc -3'
miRNA:   3'- -UCGC-GCCGCCGCCGUacuaau--AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 194698 0.66 0.972449
Target:  5'- gGGCGCGG-GGUG-CGUGGg---GCGCg -3'
miRNA:   3'- -UCGCGCCgCCGCcGUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 193306 0.68 0.934562
Target:  5'- cGGCGCGGgGGUGGUGg------GCACg -3'
miRNA:   3'- -UCGCGCCgCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 192884 0.66 0.972449
Target:  5'- gAGCGCGaCGGCGGU-UGAcgAUcagcaGCGCg -3'
miRNA:   3'- -UCGCGCcGCCGCCGuACUaaUA-----UGUG- -5'
13942 5' -54.6 NC_003521.1 + 191736 0.67 0.948265
Target:  5'- uGCGCGuGUGGUGGCcgGGUgaggaaGCg -3'
miRNA:   3'- uCGCGC-CGCCGCCGuaCUAauaug-UG- -5'
13942 5' -54.6 NC_003521.1 + 190590 0.67 0.943929
Target:  5'- cAGCGUGuCGGCGGCGgugGAgaugGUAC-Ca -3'
miRNA:   3'- -UCGCGCcGCCGCCGUa--CUaa--UAUGuG- -5'
13942 5' -54.6 NC_003521.1 + 190309 0.68 0.939362
Target:  5'- cGCGCGGCGGUccuggucgaucGGCgacgGUGAUg--GCAg -3'
miRNA:   3'- uCGCGCCGCCG-----------CCG----UACUAauaUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.