miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 240645 0.7 0.858231
Target:  5'- gGGCGUGcagggaggccgaaGCGGCGGCcgGAgccGUGCAg -3'
miRNA:   3'- -UCGCGC-------------CGCCGCCGuaCUaa-UAUGUg -5'
13942 5' -54.6 NC_003521.1 + 240080 0.7 0.843377
Target:  5'- cGGCGUGG-GGCuugcacguGGUggGGUUGUGCACg -3'
miRNA:   3'- -UCGCGCCgCCG--------CCGuaCUAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 235776 0.66 0.975079
Target:  5'- -uCGCGGgGGCGGCGUGccc---CGCc -3'
miRNA:   3'- ucGCGCCgCCGCCGUACuaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 233998 0.7 0.873807
Target:  5'- cAGaCGCGGCGGCGGCGUc--------- -3'
miRNA:   3'- -UC-GCGCCGCCGCCGUAcuaauaugug -5'
13942 5' -54.6 NC_003521.1 + 233339 0.69 0.885732
Target:  5'- cGGCGgaGGCGGCGGCAgucccagcagACGCc -3'
miRNA:   3'- -UCGCg-CCGCCGCCGUacuaaua---UGUG- -5'
13942 5' -54.6 NC_003521.1 + 230235 0.66 0.975079
Target:  5'- uGUGCGGUGuCcuUAUGAUUGUGCACa -3'
miRNA:   3'- uCGCGCCGCcGccGUACUAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 227631 0.66 0.972175
Target:  5'- aAGCGCaGCGGCGGUA-------GCGCc -3'
miRNA:   3'- -UCGCGcCGCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 227098 0.74 0.636196
Target:  5'- cGGCGCGGCGGCgGGCGagGAccccaugGCGCu -3'
miRNA:   3'- -UCGCGCCGCCG-CCGUa-CUaaua---UGUG- -5'
13942 5' -54.6 NC_003521.1 + 226367 0.66 0.975332
Target:  5'- cGCGgGaGCGGCGGCugacgccgccgcagGGccgUGUGCACc -3'
miRNA:   3'- uCGCgC-CGCCGCCGua------------CUa--AUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 226152 0.66 0.977522
Target:  5'- --aGCGGCGGCacucGGCGUcGUUcaGCGCg -3'
miRNA:   3'- ucgCGCCGCCG----CCGUAcUAAuaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 226027 0.67 0.962692
Target:  5'- gAGCGCGaGCGGCG-CGUGcugcaacaGCACu -3'
miRNA:   3'- -UCGCGC-CGCCGCcGUACuaaua---UGUG- -5'
13942 5' -54.6 NC_003521.1 + 225575 0.77 0.51541
Target:  5'- cGGCGCucggguuGGCGGCGGCAUGuggcgaACGCg -3'
miRNA:   3'- -UCGCG-------CCGCCGCCGUACuaaua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 224078 0.67 0.955879
Target:  5'- -cCGCGGUGGCGGCG-------GCGCa -3'
miRNA:   3'- ucGCGCCGCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 224016 0.66 0.972449
Target:  5'- cAGCgGCGGgccCGGCGGUcgGGgcggGCGCc -3'
miRNA:   3'- -UCG-CGCC---GCCGCCGuaCUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 222810 0.66 0.978447
Target:  5'- uAGCGCGGCucggugguggaaaacGGCGucuGCggGUGGcgAUACACg -3'
miRNA:   3'- -UCGCGCCG---------------CCGC---CG--UACUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 221898 0.66 0.975079
Target:  5'- cGCG-GGCGGCGaGCuaaGGccAUGCACg -3'
miRNA:   3'- uCGCgCCGCCGC-CGua-CUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 221632 0.66 0.966597
Target:  5'- aGGCGCGGCGGgacCAUGucgcUGCGCg -3'
miRNA:   3'- -UCGCGCCGCCgccGUACuaauAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 221351 0.66 0.966597
Target:  5'- cAGCGUGGCGGUgacGGCGUcGGgcuucCACu -3'
miRNA:   3'- -UCGCGCCGCCG---CCGUA-CUaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 218717 0.67 0.959919
Target:  5'- --gGCGGCGGCGGCGggcGAgaagcgGCGu -3'
miRNA:   3'- ucgCGCCGCCGCCGUa--CUaaua--UGUg -5'
13942 5' -54.6 NC_003521.1 + 218629 0.66 0.975079
Target:  5'- cGCGCGGCGGUaagcggccacGGCcgGcg---GCGCc -3'
miRNA:   3'- uCGCGCCGCCG----------CCGuaCuaauaUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.