miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13943 3' -58.4 NC_003521.1 + 238688 0.66 0.858113
Target:  5'- -aGCAGgUCGGCGGCcGugggacguugaccAGAG-GAGGUa -3'
miRNA:   3'- gaCGUCgAGCCGUCG-C-------------UCUCaCUCCA- -5'
13943 3' -58.4 NC_003521.1 + 233116 0.67 0.842054
Target:  5'- -cGCGGCcgggaggguccgCGGCGGCGGG-G-GAGGUa -3'
miRNA:   3'- gaCGUCGa-----------GCCGUCGCUCuCaCUCCA- -5'
13943 3' -58.4 NC_003521.1 + 227104 0.67 0.843618
Target:  5'- cCUGCccGGCgCGGCGGCGGGc--GAGGa -3'
miRNA:   3'- -GACG--UCGaGCCGUCGCUCucaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 222098 0.67 0.811039
Target:  5'- cCUGCAGCgcCGGCAGCGucuc-GAGGc -3'
miRNA:   3'- -GACGUCGa-GCCGUCGCucucaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 215052 0.66 0.880269
Target:  5'- -gGCGGUgaagaggaCGGCGGCGAGcGG-GAGGg -3'
miRNA:   3'- gaCGUCGa-------GCCGUCGCUC-UCaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 213844 0.71 0.61515
Target:  5'- -aGCAGUUCGGCccagucucgcugcagGGCGuccauggcacccaAGAGUGAGGa -3'
miRNA:   3'- gaCGUCGAGCCG---------------UCGC-------------UCUCACUCCa -5'
13943 3' -58.4 NC_003521.1 + 209564 0.71 0.641856
Target:  5'- -gGCGGCgaCGGUGGCGGGGGUccGGGGg -3'
miRNA:   3'- gaCGUCGa-GCCGUCGCUCUCA--CUCCa -5'
13943 3' -58.4 NC_003521.1 + 207447 0.72 0.5631
Target:  5'- -gGCGGCU-GGCGGCGuguguGAGUGAcGGUg -3'
miRNA:   3'- gaCGUCGAgCCGUCGCu----CUCACU-CCA- -5'
13943 3' -58.4 NC_003521.1 + 204110 0.66 0.872627
Target:  5'- -gGguGCUCGGCGGCGAcauccgcGAc-GAGGg -3'
miRNA:   3'- gaCguCGAGCCGUCGCU-------CUcaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 202627 0.66 0.858113
Target:  5'- -aGCAGgUCGGCGGCcGugggacguugaccAGAG-GAGGUa -3'
miRNA:   3'- gaCGUCgAGCCGUCG-C-------------UCUCaCUCCA- -5'
13943 3' -58.4 NC_003521.1 + 191626 0.67 0.843618
Target:  5'- uUGCuguGCgCGGCgaagcgAGCGAGAGcuUGGGGUg -3'
miRNA:   3'- gACGu--CGaGCCG------UCGCUCUC--ACUCCA- -5'
13943 3' -58.4 NC_003521.1 + 186398 0.67 0.843618
Target:  5'- -aGCAGCggCGGCAGC---AGUGcAGGUa -3'
miRNA:   3'- gaCGUCGa-GCCGUCGcucUCAC-UCCA- -5'
13943 3' -58.4 NC_003521.1 + 173127 0.76 0.37467
Target:  5'- cCUGCAGCUCGGCcucagacuccgagAGCGAGuccGAGGa -3'
miRNA:   3'- -GACGUCGAGCCG-------------UCGCUCucaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 164732 0.71 0.592464
Target:  5'- gCUGCGGCggCGGCAGCGGcGAccGUGAcGGc -3'
miRNA:   3'- -GACGUCGa-GCCGUCGCU-CU--CACU-CCa -5'
13943 3' -58.4 NC_003521.1 + 156260 0.68 0.792934
Target:  5'- -gGCAGCUCGcGCAGCGccuccucGGuGGUGuAGGg -3'
miRNA:   3'- gaCGUCGAGC-CGUCGC-------UC-UCAC-UCCa -5'
13943 3' -58.4 NC_003521.1 + 155569 0.67 0.811039
Target:  5'- gCUGCAcCUCGGCGuGCGAGAG-GAa-- -3'
miRNA:   3'- -GACGUcGAGCCGU-CGCUCUCaCUcca -5'
13943 3' -58.4 NC_003521.1 + 154663 0.66 0.873332
Target:  5'- -gGCcgaGGC-CGGCAGCGAGAcgcugGAGGc -3'
miRNA:   3'- gaCG---UCGaGCCGUCGCUCUca---CUCCa -5'
13943 3' -58.4 NC_003521.1 + 142932 0.67 0.827661
Target:  5'- uUGCAGCagCGGCGGUcAGGGUcagcGGGGg -3'
miRNA:   3'- gACGUCGa-GCCGUCGcUCUCA----CUCCa -5'
13943 3' -58.4 NC_003521.1 + 137436 0.68 0.802497
Target:  5'- -gGCAGCUCGGCGGCGGccGcUGcGGc -3'
miRNA:   3'- gaCGUCGAGCCGUCGCUcuC-ACuCCa -5'
13943 3' -58.4 NC_003521.1 + 135780 0.67 0.811039
Target:  5'- -gGCGGCagUGGCGcuGCGGGAG-GAGGa -3'
miRNA:   3'- gaCGUCGa-GCCGU--CGCUCUCaCUCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.