miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13943 3' -58.4 NC_003521.1 + 116621 0.67 0.818597
Target:  5'- -aGCAGCUCGGCcucgucgGGCGGcuggucguagcGcGUGAGGa -3'
miRNA:   3'- gaCGUCGAGCCG-------UCGCU-----------CuCACUCCa -5'
13943 3' -58.4 NC_003521.1 + 105342 0.67 0.843618
Target:  5'- aCUGCGGUgguggCGGCGGUGGGAucgccccUGGGGc -3'
miRNA:   3'- -GACGUCGa----GCCGUCGCUCUc------ACUCCa -5'
13943 3' -58.4 NC_003521.1 + 202627 0.66 0.858113
Target:  5'- -aGCAGgUCGGCGGCcGugggacguugaccAGAG-GAGGUa -3'
miRNA:   3'- gaCGUCgAGCCGUCG-C-------------UCUCaCUCCA- -5'
13943 3' -58.4 NC_003521.1 + 71811 0.66 0.892877
Target:  5'- -gGCGGCgucgucuUCGGCGGCGGGcucGGUGAcGUc -3'
miRNA:   3'- gaCGUCG-------AGCCGUCGCUC---UCACUcCA- -5'
13943 3' -58.4 NC_003521.1 + 155569 0.67 0.811039
Target:  5'- gCUGCAcCUCGGCGuGCGAGAG-GAa-- -3'
miRNA:   3'- -GACGUcGAGCCGU-CGCUCUCaCUcca -5'
13943 3' -58.4 NC_003521.1 + 36384 0.67 0.80764
Target:  5'- -gGCAGCgaggugaccaccaCGGCGGgGAGGGUGgcgaGGGUg -3'
miRNA:   3'- gaCGUCGa------------GCCGUCgCUCUCAC----UCCA- -5'
13943 3' -58.4 NC_003521.1 + 137436 0.68 0.802497
Target:  5'- -gGCAGCUCGGCGGCGGccGcUGcGGc -3'
miRNA:   3'- gaCGUCGAGCCGUCGCUcuC-ACuCCa -5'
13943 3' -58.4 NC_003521.1 + 70234 0.71 0.630974
Target:  5'- -cGCAGCagGGCuaggcagGGCGAGcuGGUGGGGUg -3'
miRNA:   3'- gaCGUCGagCCG-------UCGCUC--UCACUCCA- -5'
13943 3' -58.4 NC_003521.1 + 116179 0.66 0.886999
Target:  5'- gCUGCuGCUCcuguGGCcGCgGAGAG-GAGGg -3'
miRNA:   3'- -GACGuCGAG----CCGuCG-CUCUCaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 209564 0.71 0.641856
Target:  5'- -gGCGGCgaCGGUGGCGGGGGUccGGGGg -3'
miRNA:   3'- gaCGUCGa-GCCGUCGCUCUCA--CUCCa -5'
13943 3' -58.4 NC_003521.1 + 72534 0.68 0.766966
Target:  5'- gCUGCGGaggCGGCGGCGAcGGUGucGUc -3'
miRNA:   3'- -GACGUCga-GCCGUCGCUcUCACucCA- -5'
13943 3' -58.4 NC_003521.1 + 115425 0.68 0.766966
Target:  5'- aCU-CAGCgccgCGGC-GCGGGGGUGAcGGUg -3'
miRNA:   3'- -GAcGUCGa---GCCGuCGCUCUCACU-CCA- -5'
13943 3' -58.4 NC_003521.1 + 19427 0.68 0.784988
Target:  5'- aCUGCAGC-CGGCAGgaccgggaagaCGAaGAG-GAGGa -3'
miRNA:   3'- -GACGUCGaGCCGUC-----------GCU-CUCaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 222098 0.67 0.811039
Target:  5'- cCUGCAGCgcCGGCAGCGucuc-GAGGc -3'
miRNA:   3'- -GACGUCGa-GCCGUCGCucucaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 135780 0.67 0.811039
Target:  5'- -gGCGGCagUGGCGcuGCGGGAG-GAGGa -3'
miRNA:   3'- gaCGUCGa-GCCGU--CGCUCUCaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 98964 0.66 0.861815
Target:  5'- -gGCGGCUagcgaCGGCGGCGccuuuaggaggcgucAGGG-GAGGUa -3'
miRNA:   3'- gaCGUCGA-----GCCGUCGC---------------UCUCaCUCCA- -5'
13943 3' -58.4 NC_003521.1 + 59166 0.66 0.873332
Target:  5'- gCUGCGGCaCGGCGccGCGGGcAGUcAGGa -3'
miRNA:   3'- -GACGUCGaGCCGU--CGCUC-UCAcUCCa -5'
13943 3' -58.4 NC_003521.1 + 154663 0.66 0.873332
Target:  5'- -gGCcgaGGC-CGGCAGCGAGAcgcugGAGGc -3'
miRNA:   3'- gaCG---UCGaGCCGUCGCUCUca---CUCCa -5'
13943 3' -58.4 NC_003521.1 + 55247 0.66 0.886999
Target:  5'- -aGCGGCUCGcCGGCGAGcccgcgGGGGa -3'
miRNA:   3'- gaCGUCGAGCcGUCGCUCuca---CUCCa -5'
13943 3' -58.4 NC_003521.1 + 103057 0.66 0.886999
Target:  5'- gCUGCAGacagggCGGguGCGcGGGcGAGGg -3'
miRNA:   3'- -GACGUCga----GCCguCGCuCUCaCUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.