miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13943 5' -54.5 NC_003521.1 + 12480 1.11 0.004988
Target:  5'- cGAACCCGACUCCAGUGAGGAGAACCCc -3'
miRNA:   3'- -CUUGGGCUGAGGUCACUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 4222 0.77 0.549579
Target:  5'- uGAAgCCGGCcCCGG-GAGGAGGACCg -3'
miRNA:   3'- -CUUgGGCUGaGGUCaCUCCUCUUGGg -5'
13943 5' -54.5 NC_003521.1 + 64253 0.76 0.579026
Target:  5'- aGGACCUGAuCUUCAGUcuGGAGAACCUg -3'
miRNA:   3'- -CUUGGGCU-GAGGUCAcuCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 103117 0.74 0.727354
Target:  5'- aGGACgCGGggugaggCUGGUGGGGAGAGCCCa -3'
miRNA:   3'- -CUUGgGCUga-----GGUCACUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 142522 0.73 0.76508
Target:  5'- cGAGCCCGAgUCgGccGAGGAGGagcggGCCCg -3'
miRNA:   3'- -CUUGGGCUgAGgUcaCUCCUCU-----UGGG- -5'
13943 5' -54.5 NC_003521.1 + 121726 0.73 0.774252
Target:  5'- -cGCUgGGCUCCGacgagGAGGAGGACCUa -3'
miRNA:   3'- cuUGGgCUGAGGUca---CUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 214863 0.72 0.809652
Target:  5'- -uACCCGcaGCUcucguaCCGGUGccAGGAGGACCCc -3'
miRNA:   3'- cuUGGGC--UGA------GGUCAC--UCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 235619 0.72 0.826465
Target:  5'- gGAGCCCGACcgcgugguguUUCAGUuggGAGGGGugcACCCu -3'
miRNA:   3'- -CUUGGGCUG----------AGGUCA---CUCCUCu--UGGG- -5'
13943 5' -54.5 NC_003521.1 + 32919 0.72 0.826465
Target:  5'- --cCCCGGCguaGGUGGcgccGGAGAGCCCa -3'
miRNA:   3'- cuuGGGCUGaggUCACU----CCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 27619 0.71 0.83543
Target:  5'- gGAGCCUGguGCUCCAGgagcccgagguggacGAGGAGuucaAGCCCg -3'
miRNA:   3'- -CUUGGGC--UGAGGUCa--------------CUCCUC----UUGGG- -5'
13943 5' -54.5 NC_003521.1 + 137451 0.7 0.886481
Target:  5'- ---gCCGACUCCAGcGGGGGcAGCUCg -3'
miRNA:   3'- cuugGGCUGAGGUCaCUCCUcUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 88685 0.7 0.886481
Target:  5'- cGGCCCGGCUCgGGgacaaAGGucucGAGCCCg -3'
miRNA:   3'- cUUGGGCUGAGgUCac---UCCu---CUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 119277 0.7 0.893073
Target:  5'- cGAAUCCGugUUCGccgccuucGAGGAGAGCUCa -3'
miRNA:   3'- -CUUGGGCugAGGUca------CUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 64673 0.7 0.899448
Target:  5'- -cACCgGGCUCCgAGgaGAuGGAGAACCUg -3'
miRNA:   3'- cuUGGgCUGAGG-UCa-CU-CCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 174370 0.7 0.899448
Target:  5'- aGggUCUG-CUCCccuAGUGuGGAGGACCUc -3'
miRNA:   3'- -CuuGGGCuGAGG---UCACuCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 229333 0.7 0.905602
Target:  5'- cGGGCCCGACUCgCccUGGGGAcGGCUCa -3'
miRNA:   3'- -CUUGGGCUGAG-GucACUCCUcUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 737 0.7 0.908001
Target:  5'- uGAACCCucGAUuucaacaacacacauUcCCAGUGAGGGcGGACCCc -3'
miRNA:   3'- -CUUGGG--CUG---------------A-GGUCACUCCU-CUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 196533 0.69 0.911533
Target:  5'- cAACCCGcccaGCUCCcg-GGGGAGAaagccgACCCa -3'
miRNA:   3'- cUUGGGC----UGAGGucaCUCCUCU------UGGG- -5'
13943 5' -54.5 NC_003521.1 + 235754 0.69 0.919459
Target:  5'- cGGCCgCGACUCCGGcGAuagugguaagcccguGaGAGGGCCCg -3'
miRNA:   3'- cUUGG-GCUGAGGUCaCU---------------C-CUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 205296 0.69 0.92272
Target:  5'- cGACCCGAaggCCGacuacggcggcGUGGGcGAGAACCUg -3'
miRNA:   3'- cUUGGGCUga-GGU-----------CACUC-CUCUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.