miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13943 5' -54.5 NC_003521.1 + 92469 0.66 0.986248
Target:  5'- gGGACCCGAgcaggggCgGGgGAGGGGAGgCCa -3'
miRNA:   3'- -CUUGGGCUga-----GgUCaCUCCUCUUgGG- -5'
13943 5' -54.5 NC_003521.1 + 50531 0.66 0.986087
Target:  5'- cGGACCCGGCUgCAgcggcaguacggcGUgaucgagggcGAGGAGuGGCCCc -3'
miRNA:   3'- -CUUGGGCUGAgGU-------------CA----------CUCCUC-UUGGG- -5'
13943 5' -54.5 NC_003521.1 + 101945 0.66 0.984576
Target:  5'- -uGCCCGugUCCAGgcuguucucGGGGugcgagauGGggUCCa -3'
miRNA:   3'- cuUGGGCugAGGUCa--------CUCC--------UCuuGGG- -5'
13943 5' -54.5 NC_003521.1 + 7161 0.66 0.984576
Target:  5'- gGAACCCGcGCcCCAGgccGAGuAGAugCCu -3'
miRNA:   3'- -CUUGGGC-UGaGGUCa--CUCcUCUugGG- -5'
13943 5' -54.5 NC_003521.1 + 220482 0.66 0.984576
Target:  5'- cAGCCUGACggcggccaucuUCCAGaUGugcucGGAGAGCCg -3'
miRNA:   3'- cUUGGGCUG-----------AGGUC-ACu----CCUCUUGGg -5'
13943 5' -54.5 NC_003521.1 + 141387 0.66 0.982754
Target:  5'- -uGCCCGAUgacgaCAGcaacgGAGGGGAACUg -3'
miRNA:   3'- cuUGGGCUGag---GUCa----CUCCUCUUGGg -5'
13943 5' -54.5 NC_003521.1 + 224269 0.66 0.982754
Target:  5'- cGGGCCCGccGCUgCCGcagGAGGAGGACa- -3'
miRNA:   3'- -CUUGGGC--UGA-GGUca-CUCCUCUUGgg -5'
13943 5' -54.5 NC_003521.1 + 186915 0.66 0.978631
Target:  5'- gGGGCCCcuGugUCaaccgGAGGAGcAGCCCg -3'
miRNA:   3'- -CUUGGG--CugAGguca-CUCCUC-UUGGG- -5'
13943 5' -54.5 NC_003521.1 + 175920 0.66 0.976315
Target:  5'- gGGACCUGGC-CCgAGgagccgGAGGAGGACa- -3'
miRNA:   3'- -CUUGGGCUGaGG-UCa-----CUCCUCUUGgg -5'
13943 5' -54.5 NC_003521.1 + 142130 0.66 0.976315
Target:  5'- aGGGCCUGGuggCUGGUGAGGcGGugCCg -3'
miRNA:   3'- -CUUGGGCUga-GGUCACUCCuCUugGG- -5'
13943 5' -54.5 NC_003521.1 + 71977 0.67 0.97382
Target:  5'- uGAGCCCGGCgUCC-GUGAcGcgcagcucgcuGGGGCCCa -3'
miRNA:   3'- -CUUGGGCUG-AGGuCACUcC-----------UCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 120550 0.67 0.97382
Target:  5'- aGGGCCCucGGCggCCGGcggucccgGGGGAGcGCCCg -3'
miRNA:   3'- -CUUGGG--CUGa-GGUCa-------CUCCUCuUGGG- -5'
13943 5' -54.5 NC_003521.1 + 62035 0.67 0.971139
Target:  5'- gGAGCCggCGGCggucCCGGUGAcGGGGAACg- -3'
miRNA:   3'- -CUUGG--GCUGa---GGUCACU-CCUCUUGgg -5'
13943 5' -54.5 NC_003521.1 + 54377 0.67 0.971139
Target:  5'- cGACgaCGGCUCCGGUcuGGAGAacgACCUg -3'
miRNA:   3'- cUUGg-GCUGAGGUCAcuCCUCU---UGGG- -5'
13943 5' -54.5 NC_003521.1 + 45888 0.67 0.971139
Target:  5'- aGAGCCUGuuguCUCUuuuuuuucGGGGAGAACCUa -3'
miRNA:   3'- -CUUGGGCu---GAGGuca-----CUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 215060 0.67 0.968267
Target:  5'- -cGCCCGACggCGGUGAaGAGGACg- -3'
miRNA:   3'- cuUGGGCUGagGUCACUcCUCUUGgg -5'
13943 5' -54.5 NC_003521.1 + 220100 0.67 0.968267
Target:  5'- cGGGCCCGcACuggaUCCGGgucucGGAGGGCCUg -3'
miRNA:   3'- -CUUGGGC-UG----AGGUCacu--CCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 101396 0.67 0.965198
Target:  5'- -cGCuuGACggCCAcgcAGGAGAGCCCg -3'
miRNA:   3'- cuUGggCUGa-GGUcacUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 91941 0.68 0.958803
Target:  5'- uGGACCCGGCggcggaccccguggCGGcGAGGgcGGAACCCg -3'
miRNA:   3'- -CUUGGGCUGag------------GUCaCUCC--UCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 121255 0.68 0.958446
Target:  5'- cGGCuCCGACUCCGacGAGGAcGAGCUg -3'
miRNA:   3'- cUUG-GGCUGAGGUcaCUCCU-CUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.