miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13943 5' -54.5 NC_003521.1 + 236919 0.68 0.937798
Target:  5'- -cACCCGcGgUUCAGgcaGAGGAGGACUCu -3'
miRNA:   3'- cuUGGGC-UgAGGUCa--CUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 235754 0.69 0.919459
Target:  5'- cGGCCgCGACUCCGGcGAuagugguaagcccguGaGAGGGCCCg -3'
miRNA:   3'- cUUGG-GCUGAGGUCaCU---------------C-CUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 235619 0.72 0.826465
Target:  5'- gGAGCCCGACcgcgugguguUUCAGUuggGAGGGGugcACCCu -3'
miRNA:   3'- -CUUGGGCUG----------AGGUCA---CUCCUCu--UGGG- -5'
13943 5' -54.5 NC_003521.1 + 229333 0.7 0.905602
Target:  5'- cGGGCCCGACUCgCccUGGGGAcGGCUCa -3'
miRNA:   3'- -CUUGGGCUGAG-GucACUCCUcUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 227102 0.68 0.94672
Target:  5'- -uGCCCGGCgcggCGGcGGGcGAGGACCCc -3'
miRNA:   3'- cuUGGGCUGag--GUCaCUC-CUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 224269 0.66 0.982754
Target:  5'- cGGGCCCGccGCUgCCGcagGAGGAGGACa- -3'
miRNA:   3'- -CUUGGGC--UGA-GGUca-CUCCUCUUGgg -5'
13943 5' -54.5 NC_003521.1 + 220482 0.66 0.984576
Target:  5'- cAGCCUGACggcggccaucuUCCAGaUGugcucGGAGAGCCg -3'
miRNA:   3'- cUUGGGCUG-----------AGGUC-ACu----CCUCUUGGg -5'
13943 5' -54.5 NC_003521.1 + 220100 0.67 0.968267
Target:  5'- cGGGCCCGcACuggaUCCGGgucucGGAGGGCCUg -3'
miRNA:   3'- -CUUGGGC-UG----AGGUCacu--CCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 219836 0.68 0.94672
Target:  5'- aGACCCGGaUCCAGUGcGG---GCCCg -3'
miRNA:   3'- cUUGGGCUgAGGUCACuCCucuUGGG- -5'
13943 5' -54.5 NC_003521.1 + 215060 0.67 0.968267
Target:  5'- -cGCCCGACggCGGUGAaGAGGACg- -3'
miRNA:   3'- cuUGGGCUGagGUCACUcCUCUUGgg -5'
13943 5' -54.5 NC_003521.1 + 214863 0.72 0.809652
Target:  5'- -uACCCGcaGCUcucguaCCGGUGccAGGAGGACCCc -3'
miRNA:   3'- cuUGGGC--UGA------GGUCAC--UCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 211763 0.69 0.932999
Target:  5'- uAGCCCGAgaugUCCGGccaggGAGGAaAGCCCg -3'
miRNA:   3'- cUUGGGCUg---AGGUCa----CUCCUcUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 205296 0.69 0.92272
Target:  5'- cGACCCGAaggCCGacuacggcggcGUGGGcGAGAACCUg -3'
miRNA:   3'- cUUGGGCUga-GGU-----------CACUC-CUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 196533 0.69 0.911533
Target:  5'- cAACCCGcccaGCUCCcg-GGGGAGAaagccgACCCa -3'
miRNA:   3'- cUUGGGC----UGAGGucaCUCCUCU------UGGG- -5'
13943 5' -54.5 NC_003521.1 + 186915 0.66 0.978631
Target:  5'- gGGGCCCcuGugUCaaccgGAGGAGcAGCCCg -3'
miRNA:   3'- -CUUGGG--CugAGguca-CUCCUC-UUGGG- -5'
13943 5' -54.5 NC_003521.1 + 175920 0.66 0.976315
Target:  5'- gGGACCUGGC-CCgAGgagccgGAGGAGGACa- -3'
miRNA:   3'- -CUUGGGCUGaGG-UCa-----CUCCUCUUGgg -5'
13943 5' -54.5 NC_003521.1 + 174370 0.7 0.899448
Target:  5'- aGggUCUG-CUCCccuAGUGuGGAGGACCUc -3'
miRNA:   3'- -CuuGGGCuGAGG---UCACuCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 165217 0.69 0.933489
Target:  5'- aGGGCCCu-CUCCGGcgacgcgagccgccgGAGGAgGGGCCCg -3'
miRNA:   3'- -CUUGGGcuGAGGUCa--------------CUCCU-CUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 150420 0.69 0.927973
Target:  5'- cGGACCCGuCUgUCGcGUGcAGGAGAgcgcGCCCg -3'
miRNA:   3'- -CUUGGGCuGA-GGU-CAC-UCCUCU----UGGG- -5'
13943 5' -54.5 NC_003521.1 + 149670 0.68 0.945007
Target:  5'- -uGCCCGACaucgugggccccgCCGGgaagcUGAGGuGGAGCCCu -3'
miRNA:   3'- cuUGGGCUGa------------GGUC-----ACUCC-UCUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.