miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13943 5' -54.5 NC_003521.1 + 64673 0.7 0.899448
Target:  5'- -cACCgGGCUCCgAGgaGAuGGAGAACCUg -3'
miRNA:   3'- cuUGGgCUGAGG-UCa-CU-CCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 737 0.7 0.908001
Target:  5'- uGAACCCucGAUuucaacaacacacauUcCCAGUGAGGGcGGACCCc -3'
miRNA:   3'- -CUUGGG--CUG---------------A-GGUCACUCCU-CUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 196533 0.69 0.911533
Target:  5'- cAACCCGcccaGCUCCcg-GGGGAGAaagccgACCCa -3'
miRNA:   3'- cUUGGGC----UGAGGucaCUCCUCU------UGGG- -5'
13943 5' -54.5 NC_003521.1 + 150420 0.69 0.927973
Target:  5'- cGGACCCGuCUgUCGcGUGcAGGAGAgcgcGCCCg -3'
miRNA:   3'- -CUUGGGCuGA-GGU-CAC-UCCUCU----UGGG- -5'
13943 5' -54.5 NC_003521.1 + 211763 0.69 0.932999
Target:  5'- uAGCCCGAgaugUCCGGccaggGAGGAaAGCCCg -3'
miRNA:   3'- cUUGGGCUg---AGGUCa----CUCCUcUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 52851 0.68 0.937798
Target:  5'- cGAACCCGugUCUuuuaaccaGGUGGGGuggugGGGACUUu -3'
miRNA:   3'- -CUUGGGCugAGG--------UCACUCC-----UCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 69329 0.68 0.949632
Target:  5'- -uGCCCGAUaacaacaaucaccaUCCGGUGGuGGGGGCCa -3'
miRNA:   3'- cuUGGGCUG--------------AGGUCACUcCUCUUGGg -5'
13943 5' -54.5 NC_003521.1 + 88991 0.68 0.954754
Target:  5'- -uGCgCCGGCUCUgc-GAGGAG-ACCCg -3'
miRNA:   3'- cuUG-GGCUGAGGucaCUCCUCuUGGG- -5'
13943 5' -54.5 NC_003521.1 + 121255 0.68 0.958446
Target:  5'- cGGCuCCGACUCCGacGAGGAcGAGCUg -3'
miRNA:   3'- cUUG-GGCUGAGGUcaCUCCU-CUUGGg -5'
13943 5' -54.5 NC_003521.1 + 215060 0.67 0.968267
Target:  5'- -cGCCCGACggCGGUGAaGAGGACg- -3'
miRNA:   3'- cuUGGGCUGagGUCACUcCUCUUGgg -5'
13943 5' -54.5 NC_003521.1 + 220100 0.67 0.968267
Target:  5'- cGGGCCCGcACuggaUCCGGgucucGGAGGGCCUg -3'
miRNA:   3'- -CUUGGGC-UG----AGGUCacu--CCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 62035 0.67 0.971139
Target:  5'- gGAGCCggCGGCggucCCGGUGAcGGGGAACg- -3'
miRNA:   3'- -CUUGG--GCUGa---GGUCACU-CCUCUUGgg -5'
13943 5' -54.5 NC_003521.1 + 54377 0.67 0.971139
Target:  5'- cGACgaCGGCUCCGGUcuGGAGAacgACCUg -3'
miRNA:   3'- cUUGg-GCUGAGGUCAcuCCUCU---UGGG- -5'
13943 5' -54.5 NC_003521.1 + 120550 0.67 0.97382
Target:  5'- aGGGCCCucGGCggCCGGcggucccgGGGGAGcGCCCg -3'
miRNA:   3'- -CUUGGG--CUGa-GGUCa-------CUCCUCuUGGG- -5'
13943 5' -54.5 NC_003521.1 + 142130 0.66 0.976315
Target:  5'- aGGGCCUGGuggCUGGUGAGGcGGugCCg -3'
miRNA:   3'- -CUUGGGCUga-GGUCACUCCuCUugGG- -5'
13943 5' -54.5 NC_003521.1 + 186915 0.66 0.978631
Target:  5'- gGGGCCCcuGugUCaaccgGAGGAGcAGCCCg -3'
miRNA:   3'- -CUUGGG--CugAGguca-CUCCUC-UUGGG- -5'
13943 5' -54.5 NC_003521.1 + 224269 0.66 0.982754
Target:  5'- cGGGCCCGccGCUgCCGcagGAGGAGGACa- -3'
miRNA:   3'- -CUUGGGC--UGA-GGUca-CUCCUCUUGgg -5'
13943 5' -54.5 NC_003521.1 + 220482 0.66 0.984576
Target:  5'- cAGCCUGACggcggccaucuUCCAGaUGugcucGGAGAGCCg -3'
miRNA:   3'- cUUGGGCUG-----------AGGUC-ACu----CCUCUUGGg -5'
13943 5' -54.5 NC_003521.1 + 7161 0.66 0.984576
Target:  5'- gGAACCCGcGCcCCAGgccGAGuAGAugCCu -3'
miRNA:   3'- -CUUGGGC-UGaGGUCa--CUCcUCUugGG- -5'
13943 5' -54.5 NC_003521.1 + 50531 0.66 0.986087
Target:  5'- cGGACCCGGCUgCAgcggcaguacggcGUgaucgagggcGAGGAGuGGCCCc -3'
miRNA:   3'- -CUUGGGCUGAgGU-------------CA----------CUCCUC-UUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.