miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13943 5' -54.5 NC_003521.1 + 88685 0.7 0.886481
Target:  5'- cGGCCCGGCUCgGGgacaaAGGucucGAGCCCg -3'
miRNA:   3'- cUUGGGCUGAGgUCac---UCCu---CUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 88991 0.68 0.954754
Target:  5'- -uGCgCCGGCUCUgc-GAGGAG-ACCCg -3'
miRNA:   3'- cuUG-GGCUGAGGucaCUCCUCuUGGG- -5'
13943 5' -54.5 NC_003521.1 + 91941 0.68 0.958803
Target:  5'- uGGACCCGGCggcggaccccguggCGGcGAGGgcGGAACCCg -3'
miRNA:   3'- -CUUGGGCUGag------------GUCaCUCC--UCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 92469 0.66 0.986248
Target:  5'- gGGACCCGAgcaggggCgGGgGAGGGGAGgCCa -3'
miRNA:   3'- -CUUGGGCUga-----GgUCaCUCCUCUUgGG- -5'
13943 5' -54.5 NC_003521.1 + 101396 0.67 0.965198
Target:  5'- -cGCuuGACggCCAcgcAGGAGAGCCCg -3'
miRNA:   3'- cuUGggCUGa-GGUcacUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 101945 0.66 0.984576
Target:  5'- -uGCCCGugUCCAGgcuguucucGGGGugcgagauGGggUCCa -3'
miRNA:   3'- cuUGGGCugAGGUCa--------CUCC--------UCuuGGG- -5'
13943 5' -54.5 NC_003521.1 + 103117 0.74 0.727354
Target:  5'- aGGACgCGGggugaggCUGGUGGGGAGAGCCCa -3'
miRNA:   3'- -CUUGgGCUga-----GGUCACUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 119277 0.7 0.893073
Target:  5'- cGAAUCCGugUUCGccgccuucGAGGAGAGCUCa -3'
miRNA:   3'- -CUUGGGCugAGGUca------CUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 120550 0.67 0.97382
Target:  5'- aGGGCCCucGGCggCCGGcggucccgGGGGAGcGCCCg -3'
miRNA:   3'- -CUUGGG--CUGa-GGUCa-------CUCCUCuUGGG- -5'
13943 5' -54.5 NC_003521.1 + 121255 0.68 0.958446
Target:  5'- cGGCuCCGACUCCGacGAGGAcGAGCUg -3'
miRNA:   3'- cUUG-GGCUGAGGUcaCUCCU-CUUGGg -5'
13943 5' -54.5 NC_003521.1 + 121726 0.73 0.774252
Target:  5'- -cGCUgGGCUCCGacgagGAGGAGGACCUa -3'
miRNA:   3'- cuUGGgCUGAGGUca---CUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 137451 0.7 0.886481
Target:  5'- ---gCCGACUCCAGcGGGGGcAGCUCg -3'
miRNA:   3'- cuugGGCUGAGGUCaCUCCUcUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 141387 0.66 0.982754
Target:  5'- -uGCCCGAUgacgaCAGcaacgGAGGGGAACUg -3'
miRNA:   3'- cuUGGGCUGag---GUCa----CUCCUCUUGGg -5'
13943 5' -54.5 NC_003521.1 + 142130 0.66 0.976315
Target:  5'- aGGGCCUGGuggCUGGUGAGGcGGugCCg -3'
miRNA:   3'- -CUUGGGCUga-GGUCACUCCuCUugGG- -5'
13943 5' -54.5 NC_003521.1 + 142522 0.73 0.76508
Target:  5'- cGAGCCCGAgUCgGccGAGGAGGagcggGCCCg -3'
miRNA:   3'- -CUUGGGCUgAGgUcaCUCCUCU-----UGGG- -5'
13943 5' -54.5 NC_003521.1 + 143160 0.68 0.958446
Target:  5'- --cCUCGACgaUCCcGUGGGGGucGGACCCg -3'
miRNA:   3'- cuuGGGCUG--AGGuCACUCCU--CUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 149670 0.68 0.945007
Target:  5'- -uGCCCGACaucgugggccccgCCGGgaagcUGAGGuGGAGCCCu -3'
miRNA:   3'- cuUGGGCUGa------------GGUC-----ACUCC-UCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 150420 0.69 0.927973
Target:  5'- cGGACCCGuCUgUCGcGUGcAGGAGAgcgcGCCCg -3'
miRNA:   3'- -CUUGGGCuGA-GGU-CAC-UCCUCU----UGGG- -5'
13943 5' -54.5 NC_003521.1 + 165217 0.69 0.933489
Target:  5'- aGGGCCCu-CUCCGGcgacgcgagccgccgGAGGAgGGGCCCg -3'
miRNA:   3'- -CUUGGGcuGAGGUCa--------------CUCCU-CUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 174370 0.7 0.899448
Target:  5'- aGggUCUG-CUCCccuAGUGuGGAGGACCUc -3'
miRNA:   3'- -CuuGGGCuGAGG---UCACuCCUCUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.