Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13943 | 5' | -54.5 | NC_003521.1 | + | 175920 | 0.66 | 0.976315 |
Target: 5'- gGGACCUGGC-CCgAGgagccgGAGGAGGACa- -3' miRNA: 3'- -CUUGGGCUGaGG-UCa-----CUCCUCUUGgg -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 186915 | 0.66 | 0.978631 |
Target: 5'- gGGGCCCcuGugUCaaccgGAGGAGcAGCCCg -3' miRNA: 3'- -CUUGGG--CugAGguca-CUCCUC-UUGGG- -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 196533 | 0.69 | 0.911533 |
Target: 5'- cAACCCGcccaGCUCCcg-GGGGAGAaagccgACCCa -3' miRNA: 3'- cUUGGGC----UGAGGucaCUCCUCU------UGGG- -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 205296 | 0.69 | 0.92272 |
Target: 5'- cGACCCGAaggCCGacuacggcggcGUGGGcGAGAACCUg -3' miRNA: 3'- cUUGGGCUga-GGU-----------CACUC-CUCUUGGG- -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 211763 | 0.69 | 0.932999 |
Target: 5'- uAGCCCGAgaugUCCGGccaggGAGGAaAGCCCg -3' miRNA: 3'- cUUGGGCUg---AGGUCa----CUCCUcUUGGG- -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 214863 | 0.72 | 0.809652 |
Target: 5'- -uACCCGcaGCUcucguaCCGGUGccAGGAGGACCCc -3' miRNA: 3'- cuUGGGC--UGA------GGUCAC--UCCUCUUGGG- -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 215060 | 0.67 | 0.968267 |
Target: 5'- -cGCCCGACggCGGUGAaGAGGACg- -3' miRNA: 3'- cuUGGGCUGagGUCACUcCUCUUGgg -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 219836 | 0.68 | 0.94672 |
Target: 5'- aGACCCGGaUCCAGUGcGG---GCCCg -3' miRNA: 3'- cUUGGGCUgAGGUCACuCCucuUGGG- -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 220100 | 0.67 | 0.968267 |
Target: 5'- cGGGCCCGcACuggaUCCGGgucucGGAGGGCCUg -3' miRNA: 3'- -CUUGGGC-UG----AGGUCacu--CCUCUUGGG- -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 220482 | 0.66 | 0.984576 |
Target: 5'- cAGCCUGACggcggccaucuUCCAGaUGugcucGGAGAGCCg -3' miRNA: 3'- cUUGGGCUG-----------AGGUC-ACu----CCUCUUGGg -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 224269 | 0.66 | 0.982754 |
Target: 5'- cGGGCCCGccGCUgCCGcagGAGGAGGACa- -3' miRNA: 3'- -CUUGGGC--UGA-GGUca-CUCCUCUUGgg -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 227102 | 0.68 | 0.94672 |
Target: 5'- -uGCCCGGCgcggCGGcGGGcGAGGACCCc -3' miRNA: 3'- cuUGGGCUGag--GUCaCUC-CUCUUGGG- -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 229333 | 0.7 | 0.905602 |
Target: 5'- cGGGCCCGACUCgCccUGGGGAcGGCUCa -3' miRNA: 3'- -CUUGGGCUGAG-GucACUCCUcUUGGG- -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 235619 | 0.72 | 0.826465 |
Target: 5'- gGAGCCCGACcgcgugguguUUCAGUuggGAGGGGugcACCCu -3' miRNA: 3'- -CUUGGGCUG----------AGGUCA---CUCCUCu--UGGG- -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 235754 | 0.69 | 0.919459 |
Target: 5'- cGGCCgCGACUCCGGcGAuagugguaagcccguGaGAGGGCCCg -3' miRNA: 3'- cUUGG-GCUGAGGUCaCU---------------C-CUCUUGGG- -5' |
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13943 | 5' | -54.5 | NC_003521.1 | + | 236919 | 0.68 | 0.937798 |
Target: 5'- -cACCCGcGgUUCAGgcaGAGGAGGACUCu -3' miRNA: 3'- cuUGGGC-UgAGGUCa--CUCCUCUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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